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BaseInfo

ncRNA ID	novel_osa_miR1289
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:36464452-36464637 [-]
Reference genome	IRGSP-1.0
Source	SRR1742995;SRR1742996
Length	24
Mature sequence(if miRNA)	163 - GAUUUUGAUAUUUUACUUGCACUG - 186
Stem-loop(if miRNA)	---G         U   A              C             CA          AGAAUUAUUAUUUU     CUUACUUUAUUAUCCAAAGUACU     AUUUUGAUA UUU CUUGCACUGUUUAA CAUUUGUCUUAUU  AAAAAAAUUU              UUUGA                       U     ||||||||| ||| |||||||||||||| |||||||||||||  ||||||||||              |||||     UAAAAUUAU AAA GAAUGUGACAAAUU GUGAGCAGAAUAA  UUUUUUUAGA              GUUUA                       U UACA         U   C              C             --          -----------CAC     UAUUUUUUGUUUUUAAACACGAA
Stem-loop sequence	GAUUUUGAUAUUUUACUUGCACUGUUUAACCAUUUGUCUUAUUCAAAAAAAAUUUAGAAUUAUUAUUUUUUUGACUUACUUUAUUAUCCAAAGUACUUUAAGCACAAAUUUUUGUUUUUUAUAUUUGCACAGAUUUUUUUAAUAAGACGAGUGCUUAAACAGUGUAAGCAAAUUAUUAAAAUACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837645.1	ncRNA:24   GUCACGUUCAUUUUAUAGUUUUAG   1   |||||||||||||||=|||||||| targets:618   CAGUGCAAGUAAAAUGUCAAAAUC   641 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
AK288203.1	ncRNA:24   GUCACGUUCAUUUUAUAGUUUUAG   1   |||||||||*|||||||||||||| targets:1716   CAGUGCAAGCAAAAUAUCAAAAUC   1739 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget
AK068624.1	ncRNA:24   GUCACGUUCAUUUUAUAGUUUUAG   1   |||||||||*|||||=|||||||| targets:198   CAGUGCAAGCAAAAUGUCAAAAUC   221 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013153F11, full insert sequence	NA	coding protein	psRNATarget
AK066510.1	ncRNA:24   GUCACGUUCAUUUUAUAGUUUUAG   1   |||||||||*|||||=|||||||| targets:1437   CAGUGCAAGCAAAAUGUCAAAAUC   1460 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence	NA	coding protein	psRNATarget
CT833020.1	ncRNA:24   GUCACGUUCAUUUUAUAGUUUUAG   1   |*||*=|||||||||||||||||| targets:1034   CCGUAUAAGUAAAAUAUCAAAAUC   1057 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN028E17, full insert sequence	NA	coding protein	psRNATarget
AK065071.1	ncRNA:24   GUCACGUUCAUUUUAUAGUUUUAG   1   ||-|*=|||||||||||||||||| targets:1036   CA-UAUAAGUAAAAUAUCAAAAUC   1058 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013001K07, full insert sequence	NA	coding protein	psRNATarget
CT831142.1	ncRNA:24   GUCACGUUCAUUUUAUAGUUUUAG   1   =**||||||*|||||||||||=|| targets:1507   UUAUGCAAGAAAAAUAUCAAAGUC   1530 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA239P12, full insert sequence	NA	coding protein	psRNATarget
AF143746.1	ncRNA:24   GUCACGUUCAUUUUAUAGUUUUAG   1   =**||||||*|||||||||||=|| targets:1489   UUAUGCAAGAAAAAUAUCAAAGUC   1512 Target Full Sequence	2.5	Oryza sativa CER1 (CER1) mRNA, complete cds	NA	coding protein	psRNATarget
CT831141.1	ncRNA:24   GUCACGUUCAUUUUAUAGUUUUAG   1   =**||||||*|||||||||||=|| targets:1507   UUAUGCAAGAAAAAUAUCAAAGUC   1530 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA225J12, full insert sequence	NA	coding protein	psRNATarget
AK100751.1	ncRNA:24   GUCACGUUCAUUUUAUAGUUUUAG   1   =**||||||*|||||||||||=|| targets:1594   UUAUGCAAGAAAAAUAUCAAAGUC   1617 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023118L15, full insert sequence	NA	coding protein	psRNATarget
AK065951.1	ncRNA:24   GUCACGUUCAUUUUAUAGUUUUAG   1   ||*|||||**|||||||||||||| targets:1448   CAAUGCAACCAAAAUAUCAAAAUC   1471 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence	NA	coding protein	psRNATarget