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BaseInfo

ncRNA ID	novel_osa_miR1285
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:9549388-9549573 [-]
Reference genome	IRGSP-1.0
Source	SRR1742995
Length	24
Mature sequence(if miRNA)	163 - AGCCCUCGACGUGACCUACAACUU - 186
Stem-loop(if miRNA)	--              C      C            ------------------------A      UGAAUUAAAACUGUUUAGGGUCCCAAAAUAAUGUUGCA   AGCCCUCGACGUGA CUACAA UUUGUAGUUGAA                         AGUUUU                                      U   |||||||||||||| |||||| ||||||||||||                         ||||||   UCGGGAGCUGCGCU GAUGUU AAACAUCAACUU                         CAGGGU                                      G CA              A      A            AAAAAAAAUAAAAUUCAGUAAAAAA      UUUACAUUAAAAUUUUAAUUUUAAAAUUUUAGAUAUUU
Stem-loop sequence	AGCCCUCGACGUGACCUACAACUUUGUAGUUGAAAAGUUUUUGAAUUAAAACUGUUUAGGGUCCCAAAAUAAUGUUGCAUGUUUAUAGAUUUUAAAAUUUUAAUUUUAAAAUUACAUUUUGGGACAAAAAAUGACUUAAAAUAAAAAAAAUUCAACUACAAAAUUGUAGAUCGCGUCGAGGGCUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288437.1	ncRNA:24   UUCAACAUCCAGUGCAGCUCCCGA   1   |||||||||||||=|||||||||| targets:1402   AAGUUGUAGGUCAUGUCGAGGGCU   1425 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090034B12, full insert sequence	NA	coding protein	psRNATarget
HI404197.1	ncRNA:24   UUCAACAUCCAGUGCAGCUCCCGA   1   |||||||||*||=||||||||||| targets:165   AAGUUGUAGAUCGCGUCGAGGGCU   188 Target Full Sequence	2.5	Sequence 2322 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236327.1	ncRNA:24   UUCAACAUCCAGUGCAGCUCCCGA   1   |||||||||*||=||||||||||| targets:165   AAGUUGUAGAUCGCGUCGAGGGCU   188 Target Full Sequence	2.5	Sequence 2322 from Patent EP2985353	NA	coding protein	psRNATarget
JB164658.1	ncRNA:24   UUCAACAUCCAGUGCAGCUCCCGA   1   |||||||||*||=||||||||||| targets:165   AAGUUGUAGAUCGCGUCGAGGGCU   188 Target Full Sequence	2.5	Sequence 2322 from Patent EP2559767	NA	coding protein	psRNATarget