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BaseInfo

ncRNA ID	novel_osa_miR1281
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:3788228-3788401 [+]
Reference genome	IRGSP-1.0
Source	SRR1742995;SRR1743002;SRR2040384;SRR2857731
Length	24
Mature sequence(if miRNA)	1 - UUUUUCGUGUCCAACUUUGACUGU - 24
Stem-loop(if miRNA)	-U    CG        -   G              A     -UUUUUUUAUAAUUC UAUUUUCAUUGUUGUUAGAUGAUAAAACAU   UUUU  UGUCCAAC UUU ACUGUCCGUCUUAU UGAAA               G                              G   ||||  |||||||| ||| |||||||||||||| |||||               |                              A   AAAG  ACAGGUUG AAA UGGCAGGCAGAAUA ACUUU               U                              U CC    AA        C   G              A     UUUUAUACUUUUUUU AAUUUUUCUGUUCAGUGCGUAUUUUAUAAU
Stem-loop sequence	UUUUUCGUGUCCAACUUUGACUGUCCGUCUUAUAUGAAAUUUUUUUAUAAUUCGUAUUUUCAUUGUUGUUAGAUGAUAAAACAUGAUUAAUAUUUUAUGCGUGACUUGUCUUUUUAAUUUUUUUUCAUAUUUUUUUCAAAUAAGACGGACGGUGAAACGUUGGACAAAGAAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242028.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUU   1   |||||||||||||||||||||||* targets:1620   ACAGUCAAAGUUGGACACGAAAAU   1643 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence	NA	coding protein	psRNATarget
XM_015776706.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUU   1   |||||||||||||||||||||||* targets:1731   ACAGUCAAAGUUGGACACGAAAAU   1754 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776705.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUU   1   |||||||||||||||||||||||* targets:1737   ACAGUCAAAGUUGGACACGAAAAU   1760 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776704.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUU   1   |||||||||||||||||||||||* targets:1743   ACAGUCAAAGUUGGACACGAAAAU   1766 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015768738.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUU   1   |||||=|||||||||||=|||||| targets:1636   ACAGUUAAAGUUGGACAUGAAAAA   1659 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC4330148), mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC4330148)	coding protein	psRNATarget
AK065455.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUU   1   |||||||||||||||=|||||||* targets:3096   ACAGUCAAAGUUGGAUACGAAAAC   3119 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013023H14, full insert sequence	NA	coding protein	psRNATarget
AK106724.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUU   1   ||||*=|||||||||||||||||| targets:812   ACAGAUAAAGUUGGACACGAAAAA   835 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-114-G11, full insert sequence	NA	coding protein	psRNATarget
AK288706.1	ncRNA:24   UGUCAGUUU-CAACCUGUGCUUUUU   1   ||=||||||-||||||||||||||* targets:3077   ACGGUCAAACGUUGGACACGAAAAU   3101 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090061L24, full insert sequence	NA	coding protein	psRNATarget
AK070816.1	ncRNA:24   UGUC----AGUUUCAACCUGUGCUUUUU   1   ||=|----||||||||||=||||||||* targets:1686   ACGGAUGAUCAAAGUUGGGCACGAAAAC   1713 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023066M01, full insert sequence	NA	coding protein	psRNATarget
AK067582.1	ncRNA:24   UGUC----AGUUUCAACCUGUGCUUUUU   1   ||||----|||||||||||||=|||||* targets:2530   ACAGAUGAUCAAAGUUGGACAUGAAAAU   2557 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013112G19, full insert sequence	NA	coding protein	psRNATarget
AK120736.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUU   1   |==*|||||||||||=|||||||| targets:2311   AUGAUCAAAGUUGGAUACGAAAAA   2334 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence	NA	coding protein	psRNATarget
XM_015762457.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUU   1   ||=*|=|||||||||||||||||* targets:2786   ACGAUUAAAGUUGGACACGAAAAC   2809 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X4, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget
XM_015762455.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUU   1   ||=*|=|||||||||||||||||* targets:2970   ACGAUUAAAGUUGGACACGAAAAC   2993 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X2, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget
XM_015762456.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUU   1   ||=*|=|||||||||||||||||* targets:2991   ACGAUUAAAGUUGGACACGAAAAC   3014 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X3, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget