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BaseInfo

ncRNA ID	novel_osa_miR1279
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:13817365-13817433 [+]
Reference genome	IRGSP-1.0
Source	SRR1742995;SRR2857734;SRR1460507;SRR1460508
Length	24
Mature sequence(if miRNA)	46 - AGAUCCAACGAUCGAAAACGAUUU - 69
Stem-loop(if miRNA)	--                         UGG  AA   AUUGUUUUCGAUCGUUGGAUCUAAC   GU  G   |||||||||||||||||||||||||   ||  A   UAGCAAAAGCUAGCAACCUAGAUUG   CA  U UU                         UUA  GA
Stem-loop sequence	AUUGUUUUCGAUCGUUGGAUCUAACUGGGUAAGAUAGACAUUGUUAGAUCCAACGAUCGAAAACGAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779655.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   |||||||||||||||||||||||| targets:1507   AAAUCGUUUUCGAUCGUUGGAUCU   1530 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget
XM_015779276.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   ||||=||||||||||||||||||| targets:1701   AAAUUGUUUUCGAUCGUUGGAUCU   1724 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X1, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
XM_015779283.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   ||||=||||||||||||||||||| targets:1694   AAAUUGUUUUCGAUCGUUGGAUCU   1717 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X2, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
XM_015779289.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   ||||=||||||||||||||||||| targets:1503   AAAUUGUUUUCGAUCGUUGGAUCU   1526 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X3, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
AK288876.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   |||||*|||||||||||||||||| targets:243   AAAUCAUUUUCGAUCGUUGGAUCU   266 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090078P15, full insert sequence	NA	coding protein	psRNATarget
AK240791.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   ||||=||||*|||||||||||||| targets:174   AAAUUGUUUCCGAUCGUUGGAUCU   197 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK287529.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   ||||=||||*|||||||||||||| targets:174   AAAUUGUUUCCGAUCGUUGGAUCU   197 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
XM_015786123.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   ||||=||||*|||||||||||||| targets:663   AAAUUGUUUCCGAUCGUUGGAUCU   686 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
HI404119.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   |||||||||*=||||||||||||| targets:54   AAAUCGUUUCUGAUCGUUGGAUCU   77 Target Full Sequence	2.0	Sequence 2244 from Patent EP2074227	NA	coding protein	psRNATarget
JB164580.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   |||||||||*=||||||||||||| targets:54   AAAUCGUUUCUGAUCGUUGGAUCU   77 Target Full Sequence	2.0	Sequence 2244 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236249.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   |||||||||*=||||||||||||| targets:54   AAAUCGUUUCUGAUCGUUGGAUCU   77 Target Full Sequence	2.0	Sequence 2244 from Patent EP2985353	NA	coding protein	psRNATarget
LQ236112.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   |||||||||*=||||||||||||| targets:53   AAAUCGUUUCUGAUCGUUGGAUCU   76 Target Full Sequence	2.0	Sequence 2107 from Patent EP2985353	NA	coding protein	psRNATarget
HI403982.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   |||||||||*=||||||||||||| targets:53   AAAUCGUUUCUGAUCGUUGGAUCU   76 Target Full Sequence	2.0	Sequence 2107 from Patent EP2074227	NA	coding protein	psRNATarget
JB164443.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   |||||||||*=||||||||||||| targets:53   AAAUCGUUUCUGAUCGUUGGAUCU   76 Target Full Sequence	2.0	Sequence 2107 from Patent EP2559767	NA	coding protein	psRNATarget
HI403939.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   |||||||||*=||||||||||||| targets:21   AAAUCGUUUCUGAUCGUUGGAUCU   44 Target Full Sequence	2.0	Sequence 2064 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236069.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   |||||||||*=||||||||||||| targets:21   AAAUCGUUUCUGAUCGUUGGAUCU   44 Target Full Sequence	2.0	Sequence 2064 from Patent EP2985353	NA	coding protein	psRNATarget
JB164400.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   |||||||||*=||||||||||||| targets:21   AAAUCGUUUCUGAUCGUUGGAUCU   44 Target Full Sequence	2.0	Sequence 2064 from Patent EP2559767	NA	coding protein	psRNATarget
AK108234.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   |||||*|||*=||||||||||||| targets:453   AAAUCAUUUCUGAUCGUUGGAUCU   476 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence	NA	coding protein	psRNATarget
XM_015757696.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   ==||=||**||||||||||||||| targets:399   GGAUUGUGGUCGAUCGUUGGAUCU   422 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58900 (LOC4348027), transcript variant X2, mRNA	F-box/LRR-repeat protein At3g58900(LOC4348027)	coding protein	psRNATarget
XM_015757695.1	ncRNA:24   UUUAGCAAAAGCUAGCAACCUAGA   1   ==||=||**||||||||||||||| targets:399   GGAUUGUGGUCGAUCGUUGGAUCU   422 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58900 (LOC4348027), transcript variant X1, mRNA	F-box/LRR-repeat protein At3g58900(LOC4348027)	coding protein	psRNATarget