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BaseInfo

ncRNA ID	novel_osa_miR1275
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:1042906-1043102 [+]
Reference genome	IRGSP-1.0
Source	SRR1742995;SRR1849772;SRR2040386;SRR2040396
Length	24
Mature sequence(if miRNA)	1 - ACGGAACUACAGAUUUAAUGCACC - 24
Stem-loop(if miRNA)	--         CA         C  ---CA   C           G      U     AG      A         U   C  -  G       -C    C   ACGGAACUA  GAUUUAAUG AC     UAU AUAAAACUACA AUUUAG GAUUA  UUAUCA AGAACUACA AUU UA GA UUUAGAU  AUAG A   |||||||||  ||||||||| ||     ||| ||||||||||| |||||| |||||  |||||| ||||||||| ||| || || |||||||  |||| C   UGUUUUGAU  CUAAAUUGU UG     AUA UGUUUUGAUGU UAAAUU UUGAU  AAUAGU UUUUGAUGU UAA AU UU AAAUUUA  UAUU U AG         AA         -  AUAAA   A           G      U     AA      G         U   A  A  G       UU    A
Stem-loop sequence	ACGGAACUACAGAUUUAAUGCACCAUAUCAUAAAACUACAGAUUUAGUGAUUAAGUUAUCAAAGAACUACAUAUUCUAGAGUUUAGAUCAUAGCACUAUUAUUUAUUUAAAGUUAUAAAAUUUGUAGUUUUGUGAUAAAAUAGUUUUUAAAUGUGUAGUUUUGUAAUAAAAUAGUUGUUAAAUCAAUAGUUUUGUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015792093.1	ncRNA:24   CCACGUAAUUUAGACAUCAAGGCA   1   **|*=*|||||||||||||||||| targets:3417   UUUAUCUUAAAUCUGUAGUUCCGU   3440 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g13040, mitochondrial (LOC4344353), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g13040, mitochondrial(LOC4344353)	coding protein	psRNATarget
AK101635.1	ncRNA:24   CCACGUAAUUUAGACAUCAAGGCA   1   **|*=*|||||||||||||||||| targets:3273   UUUAUCUUAAAUCUGUAGUUCCGU   3296 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033055B02, full insert sequence	NA	coding protein	psRNATarget
AK288881.1	ncRNA:24   CCACGUAAUUUAGACAUCAAGGCA   1   ****==|||||||||||||||=|| targets:708   UUAUUGUUAAAUCUGUAGUUCUGU   731 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090079G03, full insert sequence	NA	coding protein	psRNATarget