A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_osa_miR1267
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:23562117-23562326 [+]
Reference genome	IRGSP-1.0
Source	SRR1742995
Length	25
Mature sequence(if miRNA)	1 - AUAUCAAACUUGUAGCCCUCAACGC - 25
Stem-loop(if miRNA)	-- C CA ------------UU U UCAUUUUUUGUCUGAAAAUGUAAUUUUAAAAUUAAA AUAUCAAA UUGUAGCCCU ACGCGAUCUAUAACUUUGUAGUUGA UUUU AUUUUAAG A \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\| U UAUAGUUU AACAUCGGGA UGUGCUGGAUGUUGAAACAUCAACU AUUU GACAAAUC U AA U AC UUUCAAAAACUUAA - CCAGGGUUUUAUAACAACGUACAAAUAUCUAAAACU
Stem-loop sequence	AUAUCAAACUUGUAGCCCUCAACGCGAUCUAUAACUUUGUAGUUGAUUUUUUUAUUUUAAGUCAUUUUUUGUCUGAAAAUGUAAUUUUAAAAUUAAAAUUUCAAAAUCUAUAAACAUGCAACAAUAUUUUGGGACCCUAAACAGUUUAAAUUCAAAAACUUUUCAACUACAAAGUUGUAGGUCGUGUCAAGGGCUACAAUUUUGAUAUAA

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

LQ235817.1

ncRNA:25	CGCAACUCCCGAUGUUCAAACUAUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|
targets:187	GCGUCGAUGGCUACAAAUUUGAUAU	211

2.5

Sequence 1812 from Patent EP2985353

coding protein

HI403687.1

ncRNA:25	CGCAACUCCCGAUGUUCAAACUAUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|
targets:187	GCGUCGAUGGCUACAAAUUUGAUAU	211

2.5

Sequence 1812 from Patent EP2074227

coding protein

JB164148.1

ncRNA:25	CGCAACUCCCGAUGUUCAAACUAUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|
targets:187	GCGUCGAUGGCUACAAAUUUGAUAU	211

2.5

Sequence 1812 from Patent EP2559767

coding protein

AK288437.1

ncRNA:25	CGCAACUCCCGAUGUUCAAACUAUA	1
	=\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|
targets:1414	AUGUCGAGGGCUACAAUUUUGAUAU	1438

1.5

Oryza sativa Japonica Group cDNA, clone: J090034B12, full insert sequence

coding protein