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BaseInfo

ncRNA ID novel_osa_miR1264
Species Oryza sativa
Class miRNA
Genome position Chr10:19384110-19384308 [+]
Reference genome IRGSP-1.0
Source SRR1742995
Length 24
Mature sequence(if miRNA) 176 - UAAAUAUGGACAAUGCUAAAAAGU - 199
Stem-loop(if miRNA) --UUUC         G      C        ------AU        UCAU                                       --G  -U    AA  U
      UAGUAUUGU UAUAUU AUAUAUAU        AUUUAGAU    UAACAUAUAUAUGAAUGUGGACAAUGCUAGAAAGUUUCA   GU  AUAA  CU U
      ||||||||| |||||| ||||||||        ||||||||    |||||||||||||||||||||||||||||||||||||||   ||  ||||  ||
      AUCGUAACA GUAUAA UAUAUAUA        UAGAUCUA    AUUGUAUAUAUACUUACACCUGUUACGAUCUUUCAAAGU   CA  UGUU  GA C
UGAAAA         G      A        CAAUUACU        ----                                       AUA  CC    AC  U
Stem-loop sequence UUUCUAGUAUUGUGUAUAUUCAUAUAUAUAUAUUUAGAUUCAUUAACAUAUAUAUGAAUGUGGACAAUGCUAGAAAGUUUCAGGUUAUAAAACUUUCUAGCAUUGUCCACAUAUGAAACUUUCUAGCAUUGUCCACAUUCAUAUAUAUGUUAAUCUAGAUUCAUUAACAUAUAUAUAAAUAUGGACAAUGCUAAAAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015794004.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |=|||*|||||||||=||||||||
targets:1321   AUUUUAUAGCAUUGUUCAUAUUUA   1344

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X3, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794002.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |=|||*|||||||||=||||||||
targets:1305   AUUUUAUAGCAUUGUUCAUAUUUA   1328

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X1, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794005.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |=|||*|||||||||=||||||||
targets:1293   AUUUUAUAGCAUUGUUCAUAUUUA   1316

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X4, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794003.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |=|||*|||||||||=||||||||
targets:1248   AUUUUAUAGCAUUGUUCAUAUUUA   1271

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X2, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794006.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |=|||*|||||||||=||||||||
targets:1173   AUUUUAUAGCAUUGUUCAUAUUUA   1196

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X5, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
AK066822.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |=|||*|||||||||=||||||||
targets:486   AUUUUAUAGCAUUGUUCAUAUUUA   509

2.5 Oryza sativa Japonica Group cDNA clone:J013077F20, full insert sequence NA coding protein psRNATarget
AK068294.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |||||*|||||||||||||||*||
targets:1820   ACUUUCUAGCAUUGUCCAUAUAUA   1843

2.5 Oryza sativa Japonica Group cDNA clone:J013148J04, full insert sequence NA coding protein psRNATarget
XM_015768353.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |||||*||||||||||||*|||||
targets:1653   ACUUUCUAGCAUUGUCCACAUUUA   1676

2.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X2, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768352.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |||||*||||||||||||*|||||
targets:1641   ACUUUCUAGCAUUGUCCACAUUUA   1664

2.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X1, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768356.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |||||*||||||||||||*|||||
targets:1631   ACUUUCUAGCAUUGUCCACAUUUA   1654

2.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X5, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
AK065581.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |||||*||||||||||||*|||||
targets:1603   ACUUUCUAGCAUUGUCCACAUUUA   1626

2.5 Oryza sativa Japonica Group cDNA clone:J013034J09, full insert sequence NA coding protein psRNATarget
XM_015768355.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |||||*||||||||||||*|||||
targets:1597   ACUUUCUAGCAUUGUCCACAUUUA   1620

2.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X4, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768354.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |||||*||||||||||||*|||||
targets:1583   ACUUUCUAGCAUUGUCCACAUUUA   1606

2.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X3, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768357.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  |||||*||||||||||||*|||||
targets:1547   ACUUUCUAGCAUUGUCCACAUUUA   1570

2.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X6, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
AK106502.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  ||||||||*|||||*|||||||||
targets:1453   ACUUUUUAACAUUGCCCAUAUUUA   1476

2.5 Oryza sativa Japonica Group cDNA clone:002-105-F04, full insert sequence NA coding protein psRNATarget
XM_015779859.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  *|*||||||||||*||||||||||
targets:928   UCAUUUUAGCAUUUUCCAUAUUUA   951

1.5 PREDICTED: Oryza sativa Japonica Group formin-like protein 3 (LOC4335722), mRNA formin-like protein 3(LOC4335722) coding protein psRNATarget
XM_015756761.1
ncRNA:24   UGAAAAAUCGUAACAGGUAUAAAU   1
  *|*||*|||||||*||||||||||
targets:3353   UCAUUCUAGCAUUUUCCAUAUUUA   3376

2.5 PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC4347249), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC4347249) coding protein psRNATarget
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