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BaseInfo

ncRNA ID	novel_osa_miR1261
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:19607506-19607647 [+]
Reference genome	IRGSP-1.0
Source	SRR1742994
Length	24
Mature sequence(if miRNA)	1 - CAGUUUGCAUGGAAAUCGUGAGAC - 24
Stem-loop(if miRNA)	--C       A       C U     C   CUU                   G      -   ---AAG   U    AGUUUGC UGGAAAU G GAGAC AAU   UUGAGCCUAAUUAGUUCAU AUUAGC CAU      UGC A    ||||||| ||||||| | ||||| |||   ||||||||||||||||||| |||||| |||      |||    UCGAGCG AUCUUUG C CUCUG UUA   AAUUCGGAUUAAUUAGGUA UAAUCG GUA      AUG C GUA       G       A U     C   AAU                   G      U   CACCCA   A
Stem-loop sequence	CAGUUUGCAUGGAAAUCGUGAGACCAAUCUUUUGAGCCUAAUUAGUUCAUGAUUAGCCAUAAGUGCUACAGUAACCCACAUGUGCUAAUGAUGGAUUAAUUAGGCUUAAUAAAUUCGUCUCUCAGUUUCUAGGCGAGCUAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK103318.1	ncRNA:24   CAGAGUGCUAAAGGUACGUUUGAC   1   |||||=|||||||||||||||||| targets:1170   GUCUCGCGAUUUCCAUGCAAACUG   1193 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence	NA	coding protein	psRNATarget
AK101179.1	ncRNA:24   CAGAGUGCUAAAGGUACGUUUGAC   1   |||||=|||||||||||||||||* targets:2741   GUCUCGCGAUUUCCAUGCAAACUA   2764 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033029D23, full insert sequence	NA	coding protein	psRNATarget
AK120219.1	ncRNA:24   CAGAGUGCUAAAGGUACGUUUGAC   1   *||||=||||||*||||||||||| targets:627   AUCUCGCGAUUUACAUGCAAACUG   650 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013041B17, full insert sequence	NA	coding protein	psRNATarget
XM_015775081.1	ncRNA:24   CAGAGUGCUAAAGGUACGUUUGAC   1   |||||||*||||*||||||||||| targets:1135   GUCUCACAAUUUACAUGCAAACUG   1158 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group methylesterase 3 (LOC4324570), mRNA	methylesterase 3(LOC4324570)	coding protein	psRNATarget
AK069221.1	ncRNA:24   CAGAGUGCUAAAGGUACGUUUGAC   1   |||||||*||||*||||||||||| targets:619   GUCUCACAAUUUACAUGCAAACUG   642 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023018E21, full insert sequence	NA	coding protein	psRNATarget
XM_015773694.1	ncRNA:24   CAGAGUGCUAAAGGUACGUUUGAC   1   |||||||*||||*||||||||||| targets:858   GUCUCACAAUUUACAUGCAAACUG   881 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative ubiquitin-like-specific protease 1B (LOC9268223), transcript variant X2, mRNA	putative ubiquitin-like-specific protease 1B(LOC9268223)	coding protein	psRNATarget
AK099802.1	ncRNA:24   CAGAGUGCUAAAGGUACGUUUGAC   1   |||||||*||||*||||||||||| targets:864   GUCUCACAAUUUACAUGCAAACUG   887 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013098A22, full insert sequence	NA	coding protein	psRNATarget
XM_015791223.1	ncRNA:24   CAGAGUGCUAAAGGUACGUUUGAC   1   |||||||*||||*||||||||||| targets:1777   GUCUCACAAUUUACAUGCAAACUG   1800 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g01970 (LOC4344187), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g01970(LOC4344187)	coding protein	psRNATarget