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BaseInfo

ncRNA ID	novel_osa_miR1259
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:5660051-5660188 [-]
Reference genome	IRGSP-1.0
Source	SRR1742994;SRR1743002;SRR2857731;SRR2857734;SRR2857736;SRR5049790;SRR5351737;SRR5351738;SRR5351740
Length	24
Mature sequence(if miRNA)	115 - GAUUCCGUCUGUAAACUGCGAGAC - 138
Stem-loop(if miRNA)	--    C   CU     C              A    A       AA     C   AGUA     UACUG   GAUU CGU  GUAAA UGCGAGACGAAUUU UUAA CCUAAUU  UCUGU AUU    AAUGU     U   |||| |||  ||||| |||||||||||||| |||| |||||||  ||||| |||    |||||   CUAA GCA  CAUUU ACGCUCUGCUUAAA AAUU GGAUUAA  AGGUA UAA    UUACA     A GU    C   --     A              A    C       CG     C   ACUG     CCACG
Stem-loop sequence	GAUUCCGUCUGUAAACUGCGAGACGAAUUUAUUAAACCUAAUUAAUCUGUCAUUAGUAAAUGUUACUGUAGCACCACAUUGUCAAAUCAUGGAGCAAUUAGGCUUAAAAAAUUCGUCUCGCAAUUUACACGCAAUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK099913.1	ncRNA:24   CAGAGCGUCAAAUGUCUGCCUUAG   1   ||||||||||||||||=||||||| targets:805   GUCUCGCAGUUUACAGGCGGAAUC   828 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   CAGAGCGUCAAAUGUCUGCCUUAG   1   ||||||||||||||||=||||||| targets:1772   GUCUCGCAGUUUACAGGCGGAAUC   1795 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AM778048.1	ncRNA:24   CAGAGCGUCAAAUGUCUGCCUUAG   1   ||||||||||||||||=||||||| targets:75   GUCUCGCAGUUUACAGGCGGAAUC   98 Target Full Sequence	1.5	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK064922.1	ncRNA:24   CAGAGCGUCAAAUGUCUGCCUUAG   1   ||||||||||||||||=||||||| targets:2048   GUCUCGCAGUUUACAGGCGGAAUC   2071 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   CAGAGCGUCAAAUGUCUGCCUUAG   1   ||||||||||||||||=||||||| targets:75   GUCUCGCAGUUUACAGGCGGAAUC   98 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
AK288682.1	ncRNA:24   CAGAGCGUCAAAUGUCUGCCUUAG   1   *|||||||||||||||=||||||| targets:445   AUCUCGCAGUUUACAGGCGGAAUC   468 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence	NA	coding protein	psRNATarget