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BaseInfo

ncRNA ID	novel_osa_miR1257
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:1534025-1534229 [+]
Reference genome	IRGSP-1.0
Source	SRR1742994;SRR2040406
Length	21
Mature sequence(if miRNA)	185 - UUACAUAUUGAUCUAUCUUGC - 205
Stem-loop(if miRNA)	--                          A               A                    A                   CAA    -C    UACUA   AAGAUAGAUCAAUAUGUAAUGUAUCA UCCACAAACAUGCAA UUAAAAUUCAACUUCUACAG UUGUAACAAAAAUAACAAA   AACU  AAAU     U   |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||   ||||  ||||   UUCUAUCUAGUUAUACAUUAUAUAGU AGGUGUUUGUACGUU AAUUUUAAGUUGAAGAUGUU AACAUUGUUUUUAUUGUUU   UUGA  UUUA     A CG                          G               C                    C                   AAA    CA    UAUAU
Stem-loop sequence	AAGAUAGAUCAAUAUGUAAUGUAUCAAUCCACAAACAUGCAAAUUAAAAUUCAACUUCUACAGAUUGUAACAAAAAUAACAAACAAAACUCAAAUUACUAUAUAUAUAUUUACAGUUAAAUUUGUUAUUUUUGUUACAACUUGUAGAAGUUGAAUUUUAACUUGCAUGUUUGUGGAGUGAUAUAUUACAUAUUGAUCUAUCUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK072381.1	ncRNA:21   CGUUCUAUCUAGUUAUACAUU   1   |||||||||||||||||*||* targets:2313   GCAAGAUAGAUCAAUAUAUAU   2333 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023077I03, full insert sequence	NA	coding protein	psRNATarget
AK100302.1	ncRNA:21   CGUUCUAUCUAGUUAUACAUU   1   |||||||||||||||||*||* targets:2560   GCAAGAUAGAUCAAUAUAUAU   2580 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023078A16, full insert sequence	NA	coding protein	psRNATarget
CT834888.1	ncRNA:21   CGUUCUAUCUAGUUAUACAUU   1   |=|*|||||||||||||||=| targets:339   GUAUGAUAGAUCAAUAUGUGA   359 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103P09, full insert sequence	NA	coding protein	psRNATarget
AK119326.1	ncRNA:21   CGUUCUAUCUAGUUAUACAUU   1   *=||*||||||=||||||||| targets:564   AUAAUAUAGAUUAAUAUGUAA   584 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-B01, full insert sequence	NA	coding protein	psRNATarget
XM_015787447.1	ncRNA:21   CGUUCUAUCUAGUUAUACAUU   1   *=||*||||||=||||||||| targets:4683   AUAAUAUAGAUUAAUAUGUAA   4703 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 (LOC9269236), mRNA	putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130(LOC9269236)	coding protein	psRNATarget
XM_015781215.1	ncRNA:21   CGUUCUAUCUAGUUAUACAUU   1   *|||*|||*|||||||||||| targets:786   ACAAAAUAUAUCAAUAUGUAA   806 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative beta-glucosidase 15 (LOC107280799), mRNA	putative beta-glucosidase 15(LOC107280799)	coding protein	psRNATarget