Search result

BaseInfo

ncRNA ID	novel_osa_miR1255
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:6936771-6936936 [+]
Reference genome	IRGSP-1.0
Source	SRR1742994
Length	24
Mature sequence(if miRNA)	143 - CUUAAAGACCGUAGAAUUGCUCAU - 166
Stem-loop(if miRNA)	--                C     A                  CUUUUUC  U      -          CU  A   ---       GAGCAAUUUUAUGGUC UUGAG AGGUACCAUGAGGUACCA       UA UGUAAA UUUGGUACCU  UG UAU   GUAGA   |||||||||||||||| ||||| ||||||||||||||||||       || |||||| ||||||||||  || |||   ||||U   CUCGUUAAGAUGCCAG AAUUC UCCAUGGUACUCCAUGGU       AU ACAUUU AAACCAUGGA  AC AUG   UAUCA UA                A     C                  -UUUUAA  C      U          AU  C   GAG
Stem-loop sequence	GAGCAAUUUUAUGGUCCUUGAGAAGGUACCAUGAGGUACCACUUUUUCUAUUGUAAAUUUGGUACCUCUUGAUAUGUAGAUACUAUGAGGUACCAUAAGGUACCAAAUUUUACACUAAAUUUUUGGUACCUCAUGGUACCUCCUUAAAGACCGUAGAAUUGCUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015757723.1	ncRNA:24   UAC---UCGUUAAGAUGCCAGAAAUUC   1   |||---||=|||||||||||||||=|| targets:418   AUGGAGAGUAAUUCUACGGUCUUUGAG   444 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group TD and POZ domain-containing protein 4 (LOC9271695), mRNA	TD and POZ domain-containing protein 4(LOC9271695)	coding protein	psRNATarget
XM_015779910.1	ncRNA:24   UACUCGUUAAGAUGCCAGAAAUUC   1   **|||=|||||||||||||||=|| targets:412   UAGAGUAAUUCUACGGUCUUUGAG   435 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pEARLI1-like lipid transfer protein 1 (LOC9272463), mRNA	pEARLI1-like lipid transfer protein 1(LOC9272463)	coding protein	psRNATarget
AK105471.1	ncRNA:24   UACUCGUUAAGAUGCCAGAAAUUC   1   |*||||||||||||||||*||||| targets:1223   AAGAGCAAUUCUACGGUCCUUAAG   1246 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-127-A01, full insert sequence	NA	coding protein	psRNATarget
XM_015765620.1	ncRNA:24   UACUCGUUAAGAUGCCAGAAAUUC   1   |*||||||||||||||||*||||| targets:1231   AAGAGCAAUUCUACGGUCCUUAAG   1254 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X1, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
XM_015765621.1	ncRNA:24   UACUCGUUAAGAUGCCAGAAAUUC   1   |*||||||||||||||||*||||| targets:1249   AAGAGCAAUUCUACGGUCCUUAAG   1272 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X3, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
AK072846.1	ncRNA:24   UACUCGUUAAGAUGCCAGAAAUUC   1   |*||||||||||||||||*||||| targets:1683   AAGAGCAAUUCUACGGUCCUUAAG   1706 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:24   UACUCGUUAAGAUGCCAGAAAUUC   1   |*||||||||||||||||*||||| targets:2064   AAGAGCAAUUCUACGGUCCUUAAG   2087 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:24   UACUCGUUAAGAUGCCAGAAAUUC   1   |*||||||||||||||||*||||| targets:2108   AAGAGCAAUUCUACGGUCCUUAAG   2131 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget