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BaseInfo

ncRNA ID novel_osa_miR1253
Species Oryza sativa
Class miRNA
Genome position Chr8:12176917-12177004 [+]
Reference genome IRGSP-1.0
Source SRR1742994
Length 21
Mature sequence(if miRNA) 1 - UAGCAUGAUCGGUUUGCAAUC - 21
Stem-loop(if miRNA) -UA   -          G    CCAUUGUAUCU     -CCAA   CU
   GCA UGAUCGGUUU CAAU           GCCUG     ACU  A
   ||| |||||||||| ||||           |||||     |||
   CGU GCUAGCCAGA GUUG           UGGAC     UGA  U
CGA   U          A    -------UUCU     AAUAA   AA
Stem-loop sequence UAGCAUGAUCGGUUUGCAAUCCAUUGUAUCUGCCUGCCAAACUCUAUAAAGUAAUAACAGGUUCUUGUUGAAGACCGAUCGUUGCAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK243156.1
ncRNA:21   CUAACGUUUGGCUAGUACGAU   1
  |||||||||||||||||||||
targets:979   GAUUGCAAACCGAUCAUGCUA   999

0.0 Oryza sativa Japonica Group cDNA, clone: J100033G07, full insert sequence NA coding protein psRNATarget