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BaseInfo

ncRNA ID	novel_osa_miR1246
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:2557323-2557371 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR2097779;SRR1555751;SRR2099567;SRR2099745;SRR2099746;SRR2857736;SRR1556014;SRR1556018
Length	22
Mature sequence(if miRNA)	28 - CUCGCCGGGGCUGCGUGCCGCC - 49
Stem-loop(if miRNA)	--    C     C         CC   CUCG CGGGG UGCGUGCCG  A   |||| ||||| |||||||||  U   GAGC GCCCC ACGCGCGGU  A GC    U     U         UG
Stem-loop sequence	CUCGCCGGGGCUGCGUGCCGCCAUAGUUGGCGCGCAUCCCCGUCGAGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK072288.1	ncRNA:22   CCGCCGUGCGUCGGGGCCGCUC   1   ||*|||=|||=||||||||||| targets:1173   GGAGGCGCGCGGCCCCGGCGAG   1194 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023012O05, full insert sequence	NA	coding protein	psRNATarget
XM_015756552.1	ncRNA:22   CCGCCGUGCGUCGGGGCCGCUC   1   ||*|||=|||=||||||||||| targets:1471   GGAGGCGCGCGGCCCCGGCGAG   1492 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NUCLEAR FUSION DEFECTIVE 4 (LOC4347702), mRNA	protein NUCLEAR FUSION DEFECTIVE 4(LOC4347702)	coding protein	psRNATarget
AK099869.1	ncRNA:22   CCGCCGUGCGUCGGGGCCGCUC   1   ||*|||=|||=||||||||||| targets:1169   GGAGGCGCGCGGCCCCGGCGAG   1190 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013111E22, full insert sequence	NA	coding protein	psRNATarget
AK105374.1	ncRNA:22   CCGCCGUGCGUCGGGGCCGCUC   1   ||*|||=|||=||||||||||| targets:1162   GGAGGCGCGCGGCCCCGGCGAG   1183 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-120-D05, full insert sequence	NA	coding protein	psRNATarget
CT835058.1	ncRNA:22   CC--GCCGUGCGUCGGGGCCGCUC   1   ||--||||||||||||*||||||* targets:916   GGACCGGCACGCAGCCGCGGCGAC   939 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN007O14, full insert sequence	NA	coding protein	psRNATarget
XM_015779077.1	ncRNA:22   CC--GCCGUGCGUCGGGGCCGCUC   1   ||--||||||||||||*||||||* targets:915   GGACCGGCACGCAGCCGCGGCGAC   938 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335656 (LOC4335656), mRNA	uncharacterized LOC4335656(LOC4335656)	coding protein	psRNATarget
AK240915.1	ncRNA:22   CC--GCCGUGCGUCGGGGCCGCUC   1   ||--||||||||||||*||||||* targets:851   GGACCGGCACGCAGCCGCGGCGAC   874 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065037K20, full insert sequence	NA	coding protein	psRNATarget