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BaseInfo

ncRNA ID	novel_osa_miR1243
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:7629260-7629351 [-]
Reference genome	IRGSP-1.0
Source	SRR1742994;SRR1742995
Length	24
Mature sequence(if miRNA)	69 - AAGAGAUUUUAGGUGAAUAUGACA - 92
Stem-loop(if miRNA)	--               A  A   C   ---------   A   A    G   AAGAGAUUUUAGGUG AU UGA ACA         UAC AAU UAGA U   ||||||||||||||| || ||| |||         ||| ||| |||| A   UUCUCUAAAAUCUAC UA ACU UGU         AUG UUG AUCU U UA               C  C   A   AAUAUUAUG   C   G    A
Stem-loop sequence	AAGAGAUUUUAGGUGAAUAUGACACAUACAAAUAUAGAGUAUAUCUAGGUUCGUAGUAUUAUAAUGUAUCACAUCCAUCUAAAAUCUCUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK069433.1	ncRNA:24   ACA--GUAUAAGUGGAUUUUAGAGAA   1   |||--|||||*||||||||||||||| targets:366   UGUAUCAUAUCCACCUAAAAUCUCUU   391 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023025M19, full insert sequence	NA	coding protein	psRNATarget
AK288272.1	ncRNA:24   ACAGUAUAAGUGGAUUUUAGAGAA   1   ||||||||*||||||||||*|||| targets:1129   UGUCAUAUGCACCUAAAAUAUCUU   1152 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090017B03, full insert sequence	NA	coding protein	psRNATarget
XM_015794062.1	ncRNA:24   ACA--GUAUAAGUGGAUUUUAGAGAA   1   |||--|||||||*=|||||||||||| targets:1096   UGUAUCAUAUUCUUCUAAAAUCUCUU   1121 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor AIG1 (LOC4345836), mRNA	transcription factor AIG1(LOC4345836)	coding protein	psRNATarget
AK107101.1	ncRNA:24   ACA--GUAUAAGUGGAUUUUAGAGAA   1   |||--|||||*||||||||||=|||| targets:942   UGUGACAUAUGCACCUAAAAUUUCUU   967 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-122-A04, full insert sequence	NA	coding protein	psRNATarget
XM_015761223.1	ncRNA:24   ACA--GUAUAAGUGGAUUUUAGAGAA   1   |||--|||||*||||||||||=|||| targets:936   UGUGACAUAUGCACCUAAAAUUUCUU   961 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350921 (LOC4350921), mRNA	uncharacterized LOC4350921(LOC4350921)	coding protein	psRNATarget
AK107726.1	ncRNA:24   ACA--GUAUAAGUGGAUUUUAGAGAA   1   |||--|||||||*=|||||||||||| targets:498   UGUAUCAUAUUCUUCUAAAAUCUCUU   523 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-132-F02, full insert sequence	NA	coding protein	psRNATarget