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BaseInfo

ncRNA ID	novel_osa_miR1240
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:3736824-3736910 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014;SRR5049788;SRR5049789;SRR5049791
Length	21
Mature sequence(if miRNA)	67 - AGAAUUGGAGGAAAACAAACU - 87
Stem-loop(if miRNA)	--   -               ACUGAUU     UU         A     AGA AUUGGAGGAAAACAA       GCUGG  GUUGUUUGC ACA   ||| |||||||||||||||       |||||  ||||||||| ||G   UCU UAACCUCUUUUUGUU       CGACU  UAACAAACG UGU AC   A               -------     UG         G
Stem-loop sequence	AGAAUUGGAGGAAAACAAACUGAUUGCUGGUUGUUGUUUGCAACAGUGUGGCAAACAAUGUUCAGCUUGUUUUUCUCCAAUAUCUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK063039.1	ncRNA:21   UCAAACAAAAGGAGGUUAAGA   1   |*|||||||||||||||||** targets:530   AUUUUGUUUUCCUCCAAUUAG   550 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-110-D03, full insert sequence	NA	coding protein	psRNATarget
XM_015778585.1	ncRNA:21   UCAAACAAAAGGAGGUUAAGA   1   =*|||*|||||||||||||=| targets:292   GAUUUUUUUUCCUCCAAUUUU   312 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335373 (LOC4335373), transcript variant X2, mRNA	uncharacterized LOC4335373(LOC4335373)	coding protein	psRNATarget
XM_015778587.1	ncRNA:21   UCAAACAAAAGGAGGUUAAGA   1   =*|||*|||||||||||||=| targets:292   GAUUUUUUUUCCUCCAAUUUU   312 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335373 (LOC4335373), transcript variant X4, mRNA	uncharacterized LOC4335373(LOC4335373)	coding protein	psRNATarget