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BaseInfo

ncRNA ID novel_osa_miR1228
Species Oryza sativa
Class miRNA
Genome position Chr4:12970783-12970964 [+]
Reference genome IRGSP-1.0
Source SRR1742994;SRR1743006;SRR1849766;SRR1849769;SRR1849770;SRR1849771;SRR1849772;SRR1849775;SRR2040380;SRR2040385;SRR2040387;SRR2040393;SRR2040400;SRR2040403;SRR2040405;SRR2040408;SRR2040409
Length 24
Mature sequence(if miRNA) 159 - AUACGAUUUGGCGCUGAACAAAAG - 182
Stem-loop(if miRNA) --   C        G      C                        G     --A     C            AUAUU   ACGCUGGCUCAG
  UUU UUUAGCGC AAAUCG AUGGCGCUGAAUUUAGACACCUCA CGCCA   UAGCA GGCGCUGAAUGC     GGC            C
  ||| |||||||| |||||| |||||||||||||||||||||||| |||||   ||||| ||||||||||||     |||            C
  AAA AAGUCGCG UUUAGC UACCGCGACUUGAAUUUGUGGAGU GCGGU   GUUGU CUGCGACUUACG     CGG            U
GA   C        G      A                        A     GCA     -            --GCA   UGGCGCUUACCC
Stem-loop sequence UUUCUUUAGCGCGAAAUCGCAUGGCGCUGAAUUUAGACACCUCAGCGCCAAUAGCACGGCGCUGAAUGCAUAUUGGCACGCUGGCUCAGCCUCCCAUUCGCGGUGGCACGGCAUUCAGCGUCUGUUGACGUGGCGAUGAGGUGUUUAAGUUCAGCGCCAUACGAUUUGGCGCUGAACAAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ236294.1
ncRNA:24   GAAAACAAGUCGCGGUUUAGCAUA   1
  ||||||||=|||||||||||||||
targets:81   CUUUUGUUUAGCGCCAAAUCGUAU   104

1.0 Sequence 2289 from Patent EP2985353 NA coding protein psRNATarget
HI404164.1
ncRNA:24   GAAAACAAGUCGCGGUUUAGCAUA   1
  ||||||||=|||||||||||||||
targets:81   CUUUUGUUUAGCGCCAAAUCGUAU   104

1.0 Sequence 2289 from Patent EP2074227 NA coding protein psRNATarget
JB164625.1
ncRNA:24   GAAAACAAGUCGCGGUUUAGCAUA   1
  ||||||||=|||||||||||||||
targets:81   CUUUUGUUUAGCGCCAAAUCGUAU   104

1.0 Sequence 2289 from Patent EP2559767 NA coding protein psRNATarget
XM_015788686.1
ncRNA:24   GAAAACAAGUCGCGGUUUAGCAUA   1
  =|||||||=||||=||||||||||
targets:1625   UUUUUGUUUAGCGUCAAAUCGUAU   1648

2.5 PREDICTED: Oryza sativa Japonica Group probable inactive purple acid phosphatase 28 (LOC4341954), transcript variant X2, mRNA probable inactive purple acid phosphatase 28(LOC4341954) coding protein psRNATarget
XM_015788685.1
ncRNA:24   GAAAACAAGUCGCGGUUUAGCAUA   1
  =|||||||=||||=||||||||||
targets:1507   UUUUUGUUUAGCGUCAAAUCGUAU   1530

2.5 PREDICTED: Oryza sativa Japonica Group probable inactive purple acid phosphatase 28 (LOC4341954), transcript variant X1, mRNA probable inactive purple acid phosphatase 28(LOC4341954) coding protein psRNATarget
XM_015795038.1
ncRNA:24   GAAAACAAGUCGCGGUUUAGCAUA   1
  ||||||||=|||||||||||*|||
targets:2130   CUUUUGUUUAGCGCCAAAUCAUAU   2153

2.5 PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC9268118), transcript variant X3, mRNA putative protease Do-like 14(LOC9268118) coding protein psRNATarget
XM_015795040.1
ncRNA:24   GAAAACAAGUCGCGGUUUAGCAUA   1
  ||||||||=|||||||||||*|||
targets:2110   CUUUUGUUUAGCGCCAAAUCAUAU   2133

2.5 PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC9268118), transcript variant X5, mRNA putative protease Do-like 14(LOC9268118) coding protein psRNATarget
XM_015795039.1
ncRNA:24   GAAAACAAGUCGCGGUUUAGCAUA   1
  ||||||||=|||||||||||*|||
targets:2031   CUUUUGUUUAGCGCCAAAUCAUAU   2054

2.5 PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC9268118), transcript variant X4, mRNA putative protease Do-like 14(LOC9268118) coding protein psRNATarget
XM_015795037.1
ncRNA:24   GAAAACAAGUCGCGGUUUAGCAUA   1
  ||||||||=|||||||||||*|||
targets:1758   CUUUUGUUUAGCGCCAAAUCAUAU   1781

2.5 PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC9268118), transcript variant X1, mRNA putative protease Do-like 14(LOC9268118) coding protein psRNATarget
XM_015795041.1
ncRNA:24   GAAAACAAGUCGCGGUUUAGCAUA   1
  ||||||||=|||||||||||*|||
targets:1173   CUUUUGUUUAGCGCCAAAUCAUAU   1196

2.5 PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC9268118), transcript variant X6, mRNA putative protease Do-like 14(LOC9268118) coding protein psRNATarget
XM_015770637.1
ncRNA:24   GAAAACAAGUCGCGGUUUAGCAUA   1
  ||||||*|||*|||||||||||||
targets:369   CUUUUGCUCAACGCCAAAUCGUAU   392

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329649 (LOC4329649), transcript variant X1, mRNA uncharacterized LOC4329649(LOC4329649) coding protein psRNATarget
XM_015770638.1
ncRNA:24   GAAAACAAGUCGCGGUUUAGCAUA   1
  ||||||*|||*|||||||||||||
targets:369   CUUUUGCUCAACGCCAAAUCGUAU   392

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329649 (LOC4329649), transcript variant X2, mRNA uncharacterized LOC4329649(LOC4329649) coding protein psRNATarget
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