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BaseInfo

ncRNA ID novel_osa_miR1227
Species Oryza sativa
Class miRNA
Genome position Chr4:8723840-8723901 [-]
Reference genome IRGSP-1.0
Source SRR1742994
Length 21
Mature sequence(if miRNA) 42 - UCGUCCGCGUGUGGAUCCGUU - 62
Stem-loop(if miRNA) --   U    G   -        UAA      CG
  UCG CCGC UGU GGAUCCGU   CUAUGG  G
  ||| |||| ||| ||||||||   ||||||
  GGC GGCG ACG CCUAGGCG   GGUGCC  C
UC   -    -   G        ---      AA
Stem-loop sequence UCGUCCGCGUGUGGAUCCGUUAACUAUGGCGGCAACCGUGGGCGGAUCCGGCAGCGGCGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK107163.1
ncRNA:21   UUGCCUAGGUGUGCGCCUGCU   1
  |*|||||||||||||||*||*
targets:240   ACCGGAUCCACACGCGGUCGC   260

2.5 Oryza sativa Japonica Group cDNA clone:002-124-F05, full insert sequence NA coding protein psRNATarget