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BaseInfo

ncRNA ID novel_osa_miR1225
Species Oryza sativa
Class miRNA
Genome position Chr3:22103072-22103147 [+]
Reference genome IRGSP-1.0
Source SRR1742994;SRR1742995;SRR2040386;SRR2040392;SRR2040401;SRR2040402;SRR2040409
Length 25
Mature sequence(if miRNA) 52 - UAUCGGAUCUGAUACCUAUGGUACC - 76
Stem-loop(if miRNA) --           C            CAUAA    CGA
  UACCAUGGGUA CAGGUCUGAUAC     AUAU   A
  ||||||||||| ||||||||||||     ||||
  AUGGUAUCCAU GUCUAGGCUAUG     UAUA   U
CC           A            AAUCC    AUC
Stem-loop sequence UACCAUGGGUACCAGGUCUGAUACCAUAAAUAUCGAAUCUAAUAUCCUAAGUAUCGGAUCUGAUACCUAUGGUACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK289014.1
ncRNA:25   CCAUG-GUAUCCAUAGUCUAGGCUAU   1
  |*|||-|||||||||||||||*||||
targets:260   GAUACUCAUAGGUAUCAGAUCAGAUA   285

1.5 Oryza sativa Japonica Group cDNA, clone: J090089J15, full insert sequence NA coding protein psRNATarget