Search result

BaseInfo

ncRNA ID	novel_osa_miR1219
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:8048207-8048261 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1555747;SRR2097779;SRR2098557;SRR2098560;SRR2098822;SRR2098823;SRR1556014;SRR4407775;SRR4407779;SRR1556020
Length	23
Mature sequence(if miRNA)	33 - AUAAUAUAUUAUAGGUGUCGGUU - 55
Stem-loop(if miRNA)	--       A               AG   AUAAUAU UUAUAGGUGUCGGUU  U   ||||||| |||||||||||||||  U   UAUUAUA AAUAUCCACAGCCAA  G GA       A               AA
Stem-loop sequence	AUAAUAUAUUAUAGGUGUCGGUUAGUUGAAAACCGACACCUAUAAAAUAUUAUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288739.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUA   1   ||||||=|||||||||||||||| targets:2647   AACCGAUACCUAUAAUAUAUUAU   2669 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090063N20, full insert sequence	NA	coding protein	psRNATarget
AK070414.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUA   1   ||||||||||||||||||||||* targets:1139   AACCGACACCUAUAAUAUAUUAC   1161 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023053H09, full insert sequence	NA	coding protein	psRNATarget
AK070414.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUA   1   |||||=|||=||||||||||||| targets:1098   AACCGGCACUUAUAAUAUAUUAU   1120 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023053H09, full insert sequence	NA	coding protein	psRNATarget
XM_015778506.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUA   1   ||||||=||||||=||||||||| targets:151   AACCGAUACCUAUGAUAUAUUAU   173 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable inactive methyltransferase Os04g0175900 (LOC4335079), transcript variant X1, mRNA	probable inactive methyltransferase Os04g0175900(LOC4335079)	coding protein	psRNATarget
XM_015778507.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUA   1   ||||||=||||||=||||||||| targets:40   AACCGAUACCUAUGAUAUAUUAU   62 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable inactive methyltransferase Os04g0175900 (LOC4335079), transcript variant X2, mRNA	probable inactive methyltransferase Os04g0175900(LOC4335079)	coding protein	psRNATarget
AK288826.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUA   1   |||||||||||||||*||||||| targets:4707   AACCGACACCUAUAAGAUAUUAU   4729 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090073I23, full insert sequence	NA	coding protein	psRNATarget
XM_015773629.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUA   1   ||||*|||=|||||||||||||| targets:877   AACCAACAUCUAUAAUAUAUUAU   899 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28650 (LOC4332910), mRNA	GDSL esterase/lipase At1g28650(LOC4332910)	coding protein	psRNATarget
AK288845.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUA   1   ||=||||||||||||*||||||| targets:3732   AAUCGACACCUAUAAAAUAUUAU   3754 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090075D02, full insert sequence	NA	coding protein	psRNATarget
AK288922.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUA   1   ||||*|||=|||||||||||||| targets:1072   AACCAACAUCUAUAAUAUAUUAU   1094 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090081M23, full insert sequence	NA	coding protein	psRNATarget
XM_015773630.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUA   1   ||||*|||=|||||||||||||| targets:1597   AACCAACAUCUAUAAUAUAUUAU   1619 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28650-like (LOC107278316), mRNA	GDSL esterase/lipase At1g28650-like(LOC107278316)	coding protein	psRNATarget
AK069235.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUA   1   |||=|=*|||||||||||||||| targets:3418   AACUGGGACCUAUAAUAUAUUAU   3440 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023010D04, full insert sequence	NA	coding protein	psRNATarget
AK288262.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUA   1   *|=****|||||||||||||||| targets:309   UAUAAUAACCUAUAAUAUAUUAU   331 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090016B02, full insert sequence	NA	coding protein	psRNATarget