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BaseInfo

ncRNA ID	novel_osa_miR1218
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:19337948-19338056 [-]
Reference genome	IRGSP-1.0
Source	SRR1742994;SRR1849778
Length	24
Mature sequence(if miRNA)	86 - AAGAGAUUUUGGUUGGAUGUGACA - 109
Stem-loop(if miRNA)	---AA A                   AC           UAAC    CUA  UA        G GAUUUUGGUUGGAUGUGAC  AUUCUAGUAUA    GAAU   GA  UGA      | |||||||||||||||||||  |||||||||||    ||||   ||  ||G      C CUAAAAUCAAUCUACACUG  UAGGAUCAUAU    CUUA   CU  ACG UAUUA -                   CA           --UU    AAC  GC
Stem-loop sequence	AAGAGAUUUUGGUUGGAUGUGACACAUUCUAGUAUAUAACGAAUCUAGAUAUGAGGCACGUCCAAAUUCUUUAUACUAGGAUACGUCACAUCUAACUAAAAUCCAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835671.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   |||||=|||=|||||||||||||| targets:1176   UGUCAUAUCUAACCAAAAUCUCUU   1199 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128D09, full insert sequence	NA	coding protein	psRNATarget
XM_015787746.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   ||||||||||*||||||||||||| targets:2306   UGUCACAUCCCACCAAAAUCUCUU   2329 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC4340709), mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC4340709)	coding protein	psRNATarget
AK288631.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   ||||||||||||||||||||*||| targets:1341   UGUCACAUCCAACCAAAAUCCCUU   1364 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK288762.1	ncRNA:24   ACA--GUGUAGGUUGGUUUUAGAGAA   1   |||--|||||||||=||||||||||| targets:786   UGUUUCACAUCCAAUCAAAAUCUCUU   811 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090067F13, full insert sequence	NA	coding protein	psRNATarget
AK242470.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   |||||=|||||*|||||||||||| targets:911   UGUCAUAUCCAUCCAAAAUCUCUU   934 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080302H11, full insert sequence	NA	coding protein	psRNATarget
AK288255.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   *|||||||||||||||||||*||| targets:838   AGUCACAUCCAACCAAAAUCACUU   861 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090015K18, full insert sequence	NA	coding protein	psRNATarget
AK288871.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   ||||*||||||*|||||||||||| targets:6585   UGUCUCAUCCAUCCAAAAUCUCUU   6608 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090078G09, full insert sequence	NA	coding protein	psRNATarget
AK288587.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   *|||*=||||||||||||||*||| targets:2191   GGUCUUAUCCAACCAAAAUCCCUU   2214 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090050A10, full insert sequence	NA	coding protein	psRNATarget