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BaseInfo

ncRNA ID novel_osa_miR1217
Species Oryza sativa
Class miRNA
Genome position Chr12:26756847-26756914 [+]
Reference genome IRGSP-1.0
Source SRR1742994
Length 24
Mature sequence(if miRNA) 1 - AGCACAUCAUAGUACUAUGAAUCU - 24
Stem-loop(if miRNA) ---A       A     C         U      
    GCACAUC UAGUA UAUGAAUCU GAUAGGC
    ||||||| ||||| ||||||||| ||||||U
    UGUGUAG AUCAU AUGCUUAGA CUAUUCC
GCUC       G     U         U      
Stem-loop sequence AGCACAUCAUAGUACUAUGAAUCUUGAUAGGCUCCUUAUCUAGAUUCGUAUUACUAGGAUGUGUCUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015787953.1
ncRNA:24   UCUAAGUAUCAUGAUACUACACGA   1
  |*||||||||||||||||||||=*
targets:2794   AAAUUCAUAGUACUAUGAUGUGUC   2817

2.5 PREDICTED: Oryza sativa Japonica Group U-box domain-containing protein 52 (LOC4340371), transcript variant X1, mRNA U-box domain-containing protein 52(LOC4340371) coding protein psRNATarget