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BaseInfo

ncRNA ID	novel_osa_miR1216
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:17541468-17541668 [-]
Reference genome	IRGSP-1.0
Source	SRR1742994;SRR1743002;SRR1849768;SRR1849776;SRR2040401;SRR1738211;SRR1738222
Length	24
Mature sequence(if miRNA)	178 - AACGUAGAUUACUGACAAAACUCA - 201
Stem-loop(if miRNA)	--          A           C   C     C                                                   U   ACA     ACU   AACGUAGAUU CUGACAAAACU AUU CAUAA CCCUGGGCUAUUUUACGAGACGAAUCUAACGAGGUAUAUUAAUUCAUGAUU GCU   GUGAU   A   |||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||   C   UUGCAUCUAA GACUGUUUUGG UAA GUAUU GGGAUCCGAUAAAAUGCUCUGCUUAGAUUGCUUCAUAUAAUUAGGUACUAA CGA   UACUA   A AU          G           U   A     A                                                   U   --C     AUA
Stem-loop sequence	AACGUAGAUUACUGACAAAACUCAUUCCAUAACCCCUGGGCUAUUUUACGAGACGAAUCUAACGAGGUAUAUUAAUUCAUGAUUUGCUACAGUGAUACUACAAUAAUCAUCAGCUAAUCAUGGAUUAAUAUACUUCGUUAGAUUCGUCUCGUAAAAUAGCCUAGGGAUUAUGAAAUUGGUUUUGUCAGGAAUCUACGUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015762321.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |||*||||*||||||||||||||| targets:1109   UGAAUUUUAUCAGUAAUCUACGUU   1132 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget
AK240978.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |*||||||||*|||||||||=||| targets:540   UUAGUUUUGUAAGUAAUCUAUGUU   563 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget
XM_015781418.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |*=|||||*|||||||||||=||| targets:1305   UAGGUUUUAUCAGUAAUCUAUGUU   1328 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA	serine/arginine repetitive matrix protein 1(LOC4335446)	coding protein	psRNATarget
AK107263.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |*=|||||*|||||||||||=||| targets:1216   UAGGUUUUAUCAGUAAUCUAUGUU   1239 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence	NA	coding protein	psRNATarget
XM_015766387.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |**|||||||=|*||||||||||| targets:21   UUUGUUUUGUUAUUAAUCUACGUU   44 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325753 (LOC4325753), mRNA	uncharacterized LOC4325753(LOC4325753)	coding protein	psRNATarget