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BaseInfo

ncRNA ID	novel_osa_miR1214
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:7279035-7279195 [+]
Reference genome	IRGSP-1.0
Source	SRR1742994
Length	24
Mature sequence(if miRNA)	138 - ACGAAUGGUCAAAUAGUACAAAUA - 161
Stem-loop(if miRNA)	--C                C                    GUGUAAA   AAAAAAUAAAAAG     -  UAAAG       A    UUGUACUAUUUGAUCA UCGUCUUGUUCAAAAAAUUU       UAU             UUGUG CU     UACUUUA A    |||||||||||||||| ||||||||||||||||||||       |||             ||||| ||     ||||||| U    AACAUGAUAAACUGGU AGCAGAAUAAGUUUUUUAAA       AUA             AACAC GA     AUGAAAU A AUA                A                    -AUCUAA   -AUAAAUAAAAUA     U  -----       A
Stem-loop sequence	CUUGUACUAUUUGAUCACUCGUCUUGUUCAAAAAAUUUGUGUAAAUAUAAAAAAUAAAAAGUUGUGCUUAAAGUACUUUAAAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAAUCUAAAAUUUUUUGAAUAAGACGAAUGGUCAAAUAGUACAAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236511.1	ncRNA:23   UAAACAUGAUAAACUGGUAAGCA   1   =||||||||=||||||=|||||| targets:1   GUUUGUACUGUUUGACUAUUCGU   23 Target Full Sequence	2.5	Sequence 2506 from Patent EP2985353	NA	coding protein	psRNATarget
JB164842.1	ncRNA:23   UAAACAUGAUAAACUGGUAAGCA   1   =||||||||=||||||=|||||| targets:1   GUUUGUACUGUUUGACUAUUCGU   23 Target Full Sequence	2.5	Sequence 2506 from Patent EP2559767	NA	coding protein	psRNATarget
HI404381.1	ncRNA:23   UAAACAUGAUAAACUGGUAAGCA   1   =||||||||=||||||=|||||| targets:1   GUUUGUACUGUUUGACUAUUCGU   23 Target Full Sequence	2.5	Sequence 2506 from Patent EP2074227	NA	coding protein	psRNATarget
AK100378.1	ncRNA:24   AUAAACAUGAUAAACUGGUAAGCA   1   ||*|||*|||=||||||||||||| targets:1392   UACUUGCACUGUUUGACCAUUCGU   1415 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023085B20, full insert sequence	NA	coding protein	psRNATarget
AK065068.1	ncRNA:24   AUAAACAUGAUAAACUGGUAAGCA   1   ||*|||*|||=||||||||||||| targets:1117   UACUUGCACUGUUUGACCAUUCGU   1140 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013001K02, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:24   AUAAACAUGAUAAACUGGUAAGCA   1   ||*|||||||=||||||||*|||| targets:732   UACUUGUACUGUUUGACCACUCGU   755 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK288595.1	ncRNA:24   AUAAACAUGAUAAACUGGUAAGCA   1   ||*|||||||=||||||||*|||| targets:671   UACUUGUACUGUUUGACCACUCGU   694 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
AK106768.1	ncRNA:24   AUAAACAUGAUAAACUGGUAAGCA   1   |=*|||*|||=||||||||||||| targets:155   UGCUUGCACUGUUUGACCAUUCGU   178 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-115-F05, full insert sequence	NA	coding protein	psRNATarget