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BaseInfo

ncRNA ID	novel_osa_miR1212
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:5226303-5226507 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1555749;SRR2098823;SRR2099428;SRR2099436;SRR1556014;SRR4407956;SRR1556016;SRR4407960;SRR1654490
Length	24
Mature sequence(if miRNA)	182 - AAAUCCUUUAUAUCGUGGGACGGA - 205
Stem-loop(if miRNA)	--       UA C                    G                     C         ----AAA      -    UAUUAUUUAUUUU       AU   CGUCCCA  A AUAAGGGAUUUUGAGUUUUU CUUACAACGUUUGAUCACUCG CUUAUUCAA       UUUUUG AAAU             AUUUGUG  U   |||||||  | |||||||||||||||||||| ||||||||||||||||||||| |||||||||       |||||| ||||             |||||||  U   GCAGGGU  U UAUUUCCUAAAACUCAAAAA GAAUGUUGUAAACUGGUGAGC GAAUAAGUU       AAAAAC UUUA             UAAACAC  A AG       GC A                    -                     A         AAAAAAG      G    UAUUUUUUACUUU       GA
Stem-loop sequence	CGUCCCAUAACAUAAGGGAUUUUGAGUUUUUGCUUACAACGUUUGAUCACUCGCCUUAUUCAAAAAUUUUUGAAAUUAUUAUUUAUUUUAUUUGUGAUUUAAGCACAAAUUUUCAUUUUUUAUAUUUGCAAAAAGAAAAAAUUGAAUAAGACGAGUGGUCAAAUGUUGUAAGAAAAACUCAAAAUCCUUUAUAUCGUGGGACGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288319.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   |||||||||||||||||=|||||| targets:1677   UCCGUCCCACGAUAUAAGGGAUUU   1700 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
AK288652.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   *||||||||||||||||=|||||| targets:1173   ACCGUCCCACGAUAUAAGGGAUUU   1196 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090056N01, full insert sequence	NA	coding protein	psRNATarget
XM_015764835.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   ||||||||||*||||||=|||||| targets:607   UCCGUCCCACAAUAUAAGGGAUUU   630 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase EL5-like (LOC107277589), mRNA	E3 ubiquitin-protein ligase EL5-like(LOC107277589)	coding protein	psRNATarget
XM_015767968.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   |||||||||=*||||||||||||| targets:1409   UCCGUCCCAUAAUAUAAAGGAUUU   1432 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group altered inheritance rate of mitochondria protein 25 (LOC4328840), mRNA	altered inheritance rate of mitochondria protein 25(LOC4328840)	coding protein	psRNATarget
AK288846.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   |||||=|||=*||||||||||||| targets:1211   UCCGUUCCAUAAUAUAAAGGAUUU   1234 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget
JB164090.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   |||||||||**||||||||||||| targets:11   UCCGUCCCAAAAUAUAAAGGAUUU   34 Target Full Sequence	2.0	Sequence 1754 from Patent EP2559767	NA	coding protein	psRNATarget
HI403629.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   |||||||||**||||||||||||| targets:11   UCCGUCCCAAAAUAUAAAGGAUUU   34 Target Full Sequence	2.0	Sequence 1754 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235759.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   |||||||||**||||||||||||| targets:11   UCCGUCCCAAAAUAUAAAGGAUUU   34 Target Full Sequence	2.0	Sequence 1754 from Patent EP2985353	NA	coding protein	psRNATarget
AK102081.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   |||||=|||**||||||||||||| targets:1825   UCCGUUCCAAAAUAUAAAGGAUUU   1848 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033082K10, full insert sequence	NA	coding protein	psRNATarget
LQ236231.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   |||||||||**||||||||||||* targets:11   UCCGUCCCAAAAUAUAAAGGAUUA   34 Target Full Sequence	3.0	Sequence 2226 from Patent EP2985353	NA	coding protein	psRNATarget
HI404101.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   |||||||||**||||||||||||* targets:11   UCCGUCCCAAAAUAUAAAGGAUUA   34 Target Full Sequence	3.0	Sequence 2226 from Patent EP2074227	NA	coding protein	psRNATarget
JB164562.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   |||||||||**||||||||||||* targets:11   UCCGUCCCAAAAUAUAAAGGAUUA   34 Target Full Sequence	3.0	Sequence 2226 from Patent EP2559767	NA	coding protein	psRNATarget
AK288546.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   |||||||||**||||||||||||* targets:1257   UCCGUCCCAAAAUAUAAAGGAUUA   1280 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090046I04, full insert sequence	NA	coding protein	psRNATarget
AK119278.1	ncRNA:24   AGGCAGGGUGCUAUAUUUCCUAAA   1   |||**||||=*||||||||||||| targets:3055   UCCAGCCCAUAAUAUAAAGGAUUU   3078 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-130-B11, full insert sequence	NA	coding protein	psRNATarget