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BaseInfo

ncRNA ID	novel_osa_miR1210
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:8325033-8325125 [+]
Reference genome	IRGSP-1.0
Source	SRR1742993
Length	24
Mature sequence(if miRNA)	70 - UUACCAACCAGGACUAAAGAUCUA - 93
Stem-loop(if miRNA)	--U       A   C     A            -  AAA       C    AUUUUUA UCC GGUUG UAACACCAACCG GA   AAAGAUG C    ||||||| ||| ||||| |||||||||||| ||   ||||||| U    UAGAAAU AGG CCAAC AUUGUGGUUGGU CU   UUUCUAU A AUC       C   A     C            A  -GA       C
Stem-loop sequence	UAUUUUUAAUCCCGGUUGAUAACACCAACCGGAAAAAAAGAUGCCUACUAUCUUUAGUCAUGGUUGGUGUUACCAACCAGGACUAAAGAUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289098.1	ncRNA:24   AUCUAGAAAUCAGGACCAACCAUU   1   ||||||||||||||*||||||||| targets:236   UAGAUCUUUAGUCCCGGUUGGUAA   259 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK061057.1	ncRNA:24   AUCUAGAAAUCAGGACCAACCAUU   1   *=||||||||||||||||||||=* targets:305   AGGAUCUUUAGUCCUGGUUGGUGU   328 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   AUCUAGAAAUCAGGACCAACCAUU   1   *=||||||||||||*||||||||| targets:1698   AGGAUCUUUAGUCCCGGUUGGUAA   1721 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   AU--CUAGAAAUCAGGACCAACCAUU   1   ||--||||||||||||*||||||||| targets:139   UAAUGAUCUUUAGUCCCGGUUGGUAA   164 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK288438.1	ncRNA:24   AUCUAGAAAUCAGGACCAACCAUU   1   ||*|||||||||||*||||||||| targets:2361   UAAAUCUUUAGUCCCGGUUGGUAA   2384 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   AUCUAGAAAUCAGGACCAACCAUU   1   |*||||||||||||*||||||||| targets:45   UUGAUCUUUAGUCCCGGUUGGUAA   68 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:24   AUCUAGAAAUCAGGACCAACCAUU   1   ||*|||||||||||*||||||||= targets:1903   UAAAUCUUUAGUCCCGGUUGGUAG   1926 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:24   AUCUAGAAAUCAGGACCAACCAUU   1   |=|=*|||||||||*||||||||| targets:941   UGGGACUUUAGUCCCGGUUGGUAA   964 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:24   AUCUAGAAAUCAGGACCAACCAUU   1   **||||||||||||*||||||||* targets:1906   ACGAUCUUUAGUCCCGGUUGGUAU   1929 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   AUCUAGAAAUCAGGACCAACCAUU   1   ||-|||||||||||*||||||||* targets:928   UA-AUCUUUAGUCCCGGUUGGUAU   950 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   AUCUAGAAAUCAGGACCAACCAUU   1   ***|||||||||||*||||||||* targets:1372   AUUAUCUUUAGUCCCGGUUGGUAU   1395 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK119354.1	ncRNA:24   AUCUAGAAAUCAGGACCAACCAUU   1   *|*|**||||*||||||||||||| targets:63   AAAAAAUUUAAUCCUGGUUGGUAA   86 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-131-F10, full insert sequence	NA	coding protein	psRNATarget
XM_015792800.1	ncRNA:24   AUCUAGAAAUCAGGACCAACCAUU   1   *|*|**||||*||||||||||||| targets:672   AAAAAAUUUAAUCCUGGUUGGUAA   695 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346359 (LOC4346359), transcript variant X3, mRNA	uncharacterized LOC4346359(LOC4346359)	coding protein	psRNATarget