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BaseInfo

ncRNA ID	novel_osa_miR1205
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:15774764-15774918 [+]
Reference genome	IRGSP-1.0
Source	SRR1742993
Length	23
Mature sequence(if miRNA)	1 - GUCCAACUUUAAUCGUCCGUCUU - 23
Stem-loop(if miRNA)	--          A                -          ------------------------AAAAA  - GAAAAUAUAAGCCAUAG   GUCCAACUUU AUCGUCCGUCUUAUUU AAUUUUUUUU                             AU A                 A   |||||||||| |||||||||||||||| ||||||||||                             || |                 C   CAGGUUGAAA UAGUAGGCAGAAUAAA UUAAAAAAAA                             CU U                 A UA          C                C          AUAUUAAUCAUAAAAAUAACAAUAAUCUA  A UUUAUACUUAUCAUGAA
Stem-loop sequence	GUCCAACUUUAAUCGUCCGUCUUAUUUAAUUUUUUUUAAAAAAUAGAAAAUAUAAGCCAUAGACAAAGUACUAUUCAUAUUUUAUCAUCUAAUAACAAUAAAAAUACUAAUUAUAAAAAAAAAUUCAAAUAAGACGGAUGAUCAAAGUUGGACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015762457.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||||||||||||||||||||||| targets:2779   AAGACGGACGAUUAAAGUUGGAC   2801 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X4, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget
XM_015762455.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||||||||||||||||||||||| targets:2963   AAGACGGACGAUUAAAGUUGGAC   2985 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X2, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget
XM_015762456.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||||||||||||||||||||||| targets:2984   AAGACGGACGAUUAAAGUUGGAC   3006 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X3, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget
JB164363.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||||=|||||||||||||||||| targets:156   AAGAUGGACGAUUAAAGUUGGAC   178 Target Full Sequence	1.0	Sequence 2027 from Patent EP2559767	NA	coding protein	psRNATarget
HI403902.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||||=|||||||||||||||||| targets:156   AAGAUGGACGAUUAAAGUUGGAC   178 Target Full Sequence	1.0	Sequence 2027 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236032.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||||=|||||||||||||||||| targets:156   AAGAUGGACGAUUAAAGUUGGAC   178 Target Full Sequence	1.0	Sequence 2027 from Patent EP2985353	NA	coding protein	psRNATarget
AK288606.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||||||*|||||||||||||||| targets:4148   AAGACGUACGAUUAAAGUUGGAC   4170 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090052P16, full insert sequence	NA	coding protein	psRNATarget
JB164041.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||||=|||||||||||*|||||| targets:157   AAGAUGGACGAUUAAAAUUGGAC   179 Target Full Sequence	2.5	Sequence 1705 from Patent EP2559767	NA	coding protein	psRNATarget
HI403580.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||||=|||||||||||*|||||| targets:157   AAGAUGGACGAUUAAAAUUGGAC   179 Target Full Sequence	2.5	Sequence 1705 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235710.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||||=|||||||||||*|||||| targets:157   AAGAUGGACGAUUAAAAUUGGAC   179 Target Full Sequence	2.5	Sequence 1705 from Patent EP2985353	NA	coding protein	psRNATarget
JB164495.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   |||=||||||||*|||||||||| targets:176   AAGGCGGACGAUCAAAGUUGGAC   198 Target Full Sequence	1.5	Sequence 2159 from Patent EP2559767	NA	coding protein	psRNATarget
HI404034.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   |||=||||||||*|||||||||| targets:176   AAGGCGGACGAUCAAAGUUGGAC   198 Target Full Sequence	1.5	Sequence 2159 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236164.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   |||=||||||||*|||||||||| targets:176   AAGGCGGACGAUCAAAGUUGGAC   198 Target Full Sequence	1.5	Sequence 2159 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015768738.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   |||||||||*=|||||||||||| targets:1629   AAGACGGACAGUUAAAGUUGGAC   1651 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC4330148), mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC4330148)	coding protein	psRNATarget
XM_015795686.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||||||*|||||||||*|||||| targets:29   AAGACGAACGAUUAAAAUUGGAC   51 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative wall-associated receptor kinase-like 16 (LOC4347339), transcript variant X1, mRNA	putative wall-associated receptor kinase-like 16(LOC4347339)	coding protein	psRNATarget
JB164233.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||*||*||=|||||||||||||| targets:147   AAAACAGAUGAUUAAAGUUGGAC   169 Target Full Sequence	2.0	Sequence 1897 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235902.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||*||*||=|||||||||||||| targets:147   AAAACAGAUGAUUAAAGUUGGAC   169 Target Full Sequence	2.0	Sequence 1897 from Patent EP2985353	NA	coding protein	psRNATarget
HI403772.1	ncRNA:23   UUCUGCCUGCUAAUUUCAACCUG   1   ||*||*||=|||||||||||||| targets:147   AAAACAGAUGAUUAAAGUUGGAC   169 Target Full Sequence	2.0	Sequence 1897 from Patent EP2074227	NA	coding protein	psRNATarget