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BaseInfo

ncRNA ID	novel_osa_miR1196
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:6480601-6480803 [+]
Reference genome	IRGSP-1.0
Source	SRR1742993
Length	24
Mature sequence(if miRNA)	180 - UGCGUCGAGGGCUACAAUUUUGAU - 203
Stem-loop(if miRNA)	--                       CC     C            AAG      AA    AAC     AUG          AU  UUGCAUGUUUAUAGAUU   UAAAAUUGUAGCCCUCGACGCGA  UACAA UUUGUAGUUGAA   UUUUUG  UUAA   UGUUU   GUCCCAGAAU  UG                 U   |||||||||||||||||||||||  ||||| ||||||||||||   ||||||  ||||   |||||   ||||||||||  ||                 U   GUUUUAACAUCGGGAGCUGCGUU  AUGUU AAACAUCAACUU   AAAGAU  AAUU   GUAAA   CAGGGUUUUA  UU                 G UA                       AC     -            AAA      AA    -CA     AAA          CA  AAAAUUUUAAUUUUAAA
Stem-loop sequence	UAAAAUUGUAGCCCUCGACGCGACCUACAACUUUGUAGUUGAAAAGUUUUUGAAUUAAAACUGUUUAUGGUCCCAGAAUAUUGUUGCAUGUUUAUAGAUUUUGAAAUUUUAAUUUUAAAAUUACAUUUUGGGACAAAAAAUGACUUAAAAUAGAAAAAAUUCAACUACAAAUUGUACAUUGCGUCGAGGGCUACAAUUUUGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403687.1	ncRNA:24   UAGUUUUAACAUCGGGAGCUGCGU   1   ||||||||||||||||||||||== targets:3   AUCAAAAUUGUAGCCCUCGACGUG   26 Target Full Sequence	2.5	Sequence 1812 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235817.1	ncRNA:24   UAGUUUUAACAUCGGGAGCUGCGU   1   ||||||||||||||||||||||== targets:3   AUCAAAAUUGUAGCCCUCGACGUG   26 Target Full Sequence	2.5	Sequence 1812 from Patent EP2985353	NA	coding protein	psRNATarget
JB164148.1	ncRNA:24   UAGUUUUAACAUCGGGAGCUGCGU   1   ||||||||||||||||||||||== targets:3   AUCAAAAUUGUAGCCCUCGACGUG   26 Target Full Sequence	2.5	Sequence 1812 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236690.1	ncRNA:24   UAGUUUUAACAUCGGGAGCUGCGU   1   ||||||||||||||||||||||*= targets:1   AUCAAAAUUGUAGCCCUCGACGAG   24 Target Full Sequence	2.5	Sequence 2685 from Patent EP2985353	NA	coding protein	psRNATarget
HI404560.1	ncRNA:24   UAGUUUUAACAUCGGGAGCUGCGU   1   ||||||||||||||||||||||*= targets:1   AUCAAAAUUGUAGCCCUCGACGAG   24 Target Full Sequence	2.5	Sequence 2685 from Patent EP2074227	NA	coding protein	psRNATarget
JB165021.1	ncRNA:24   UAGUUUUAACAUCGGGAGCUGCGU   1   ||||||||||||||||||||||*= targets:1   AUCAAAAUUGUAGCCCUCGACGAG   24 Target Full Sequence	2.5	Sequence 2685 from Patent EP2559767	NA	coding protein	psRNATarget
AK288437.1	ncRNA:24   UAGUUUUAACAUCGGGAGCUGCGU   1   ||||||*||||||||||||||||= targets:1232   AUCAAACUUGUAGCCCUCGACGCG   1255 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090034B12, full insert sequence	NA	coding protein	psRNATarget