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BaseInfo

ncRNA ID	novel_osa_miR1190
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:19560225-19560318 [+]
Reference genome	IRGSP-1.0
Source	SRR1742993
Length	23
Mature sequence(if miRNA)	72 - ACCGGGACUAAAGAACAUCUUUA - 94
Stem-loop(if miRNA)	--      A               CAAAAG       G C  AUUU   C   AAGAUG UCUUUAGUCCCGGUU      GGUAACG G AU    GAU U   |||||| |||||||||||||||      ||||||| | ||    ||| U   UUCUAC AGAAAUCAGGGCCAA      CCAUUGU U UG    CUG U AU      A               ------       G U  -GCC   A
Stem-loop sequence	AAGAUGAUCUUUAGUCCCGGUUCAAAAGGGUAACGGGCAUAUUUGAUCUUUAGUCCCGGUUUGUGUUACCAACCGGGACUAAAGAACAUCUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288624.1	ncRNA:23   AUUUCUACAAGAAAUCAGGGCCA   1   |||||||*||||||||||||||| targets:4831   UAAAGAUAUUCUUUAGUCCCGGU   4853 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090054H14, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:23   AUUUCUACAAGAAAUCAGGGCCA   1   ||||||||*|=|||||||||||| targets:1584   UAAAGAUGAUUUUUAGUCCCGGU   1606 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015779829.1	ncRNA:23   AUUUCUACAAGAAAUCAGGGCCA   1   ||||*||**|||||||||||||| targets:1642   UAAAAAUCAUCUUUAGUCCCGGU   1664 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK066662.1	ncRNA:23   AUUUCUACA-AGAAAUCAGGGCCA   1   ||||*||||-|||||||||||||| targets:647   UAAAAAUGUAUCUUUAGUCCCGGU   670 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:23   AUUUCUACA-AGAAAUCAGGGCCA   1   ||||||||*-|||||||||||||| targets:635   UAAAGAUGGAUCUUUAGUCCCGGU   658 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:23   AUUUCUACAAGAAAUCAGGGCCA   1   ||*|*|||*|||||||||||||| targets:418   UACAAAUGAUCUUUAGUCCCGGU   440 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:23   AUUUCUA-CAAGAAAUCAGGGCCA   1   |||||||-|*|||||||||||||| targets:1822   UAAAGAUCGAUCUUUAGUCCCGGU   1845 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:23   AUUUCUACAAGAAAUCAGGGCCA   1   *|||||||*|=|||||||||||| targets:2455   AAAAGAUGCUUUUUAGUCCCGGU   2477 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:23   AUUUCUACAAGAAAUCAGGGCCA   1   ||||*|||*|||||||||||||| targets:2374   UAAAAAUGAUCUUUAGUCCCGGU   2396 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK061057.1	ncRNA:23   AUUUCUACAAGAAAUCAGGGCCA   1   ||||*|||*|||||||||||||| targets:241   UAAAAAUGAUCUUUAGUCCCGGU   263 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:23   AUUUCUACAAGAAAUCAGGGCCA   1   ||=*||*|*|||||||||||||| targets:1901   UAGUGACGAUCUUUAGUCCCGGU   1923 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK288153.1	ncRNA:23   AUUUCUACAAGAAAUCAGGGCCA   1   ||*||||**|||||||||||||| targets:33   UAUAGAUCAUCUUUAGUCCCGGU   55 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J080319C04, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:23   AUUUCUACAAGAAAUCAGGGCCA   1   ||*||||**|||||||||||||| targets:1434   UAUAGAUCAUCUUUAGUCCCGGU   1456 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:23   AUUUCUACAAGAAAUCAGGGCCA   1   ||*||||**|||||||||||||| targets:1440   UAUAGAUCAUCUUUAGUCCCGGU   1462 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015755256.1	ncRNA:23   AUUUCUACAAGAAAUCAGGGCCA   1   |||**|||*|||||||||||||| targets:136   UAAUAAUGAUCUUUAGUCCCGGU   158 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget