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BaseInfo

ncRNA ID	novel_osa_miR1189
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:19333361-19333422 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR2097779;SRR2099567;SRR1556014;SRR4407953;SRR4407959;SRR4407961
Length	23
Mature sequence(if miRNA)	40 - AUUUCAACCGGGACUAAAGAUGG - 62
Stem-loop(if miRNA)	--A               --  GA    - AU    UUUCAACCGGGACUA  AA  UGGG C  A    |||||||||||||||  ||  |||| |  U    AAAGUUGGCCUUGAU  UU  ACCC G  U CAA               AC  GG    U AU
Stem-loop sequence	AUUUCAACCGGGACUAAAGAUGGGCAUAUUUAGUCCCAGGUUCAUAGUUCCGGUUGAAAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK065811.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   ||||||||||||||||||||||| targets:1871   CCAUCUUUAGUCCCGGUUGAAAU   1893 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
CT837755.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   ||||=|||||||||||||||||| targets:1903   CCAUUUUUAGUCCCGGUUGAAAU   1925 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248M21, full insert sequence	NA	coding protein	psRNATarget
AK242216.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   |=||||||||||||||||*|||| targets:639   CUAUCUUUAGUCCCGGUUCAAAU   661 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget
AK066662.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   =|||||||||||||||*|||||| targets:615   UCAUCUUUAGUCCCGGGUGAAAU   637 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget
XM_015778766.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   |=||||||||||||||*|||||| targets:1019   CUAUCUUUAGUCCCGGGUGAAAU   1041 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group jacalin-related lectin 9 (LOC4335495), mRNA	jacalin-related lectin 9(LOC4335495)	coding protein	psRNATarget
AK065634.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   |||*=|||||||||||||||||| targets:1899   CCAGUUUUAGUCCCGGUUGAAAU   1921 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013034I10, full insert sequence	NA	coding protein	psRNATarget
AK241906.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   |=||||||||||||||||*|||| targets:1708   CUAUCUUUAGUCCCGGUUCAAAU   1730 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget
XM_015758676.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   |=||||||||||||||||*|||| targets:1948   CUAUCUUUAGUCCCGGUUCAAAU   1970 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group polyubiquitin-like (LOC107279205), mRNA	polyubiquitin-like(LOC107279205)	coding protein	psRNATarget
AK288463.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   =*||||||||||||||||||||* targets:424   UGAUCUUUAGUCCCGGUUGAAAA   446 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   *=||||||||||||||*|||||| targets:1329   GUAUCUUUAGUCCCGGGUGAAAU   1351 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   =*||=|||||||||||||||||* targets:1590   UGAUUUUUAGUCCCGGUUGAAAA   1612 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK288796.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   **||||||||||||||*|||||| targets:1790   GGAUCUUUAGUCCCGGGUGAAAU   1812 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK105552.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   |=|||||||*||||||||*|||| targets:1233   CUAUCUUUAUUCCCGGUUCAAAU   1255 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-128-A12, full insert sequence	NA	coding protein	psRNATarget
AK288167.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   |=|||||*||||||||||*|||| targets:1743   CUAUCUUCAGUCCCGGUUCAAAU   1765 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090002K22, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   =*||||*|||||||||||||||* targets:1386   UGAUCUCUAGUCCCGGUUGAAAA   1408 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   =*||||*|||||||||||||||* targets:1392   UGAUCUCUAGUCCCGGUUGAAAA   1414 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
AK288624.1	ncRNA:23   GGUAGAAAUCAGGGCCAACUUUA   1   =**|||||||||||||||*|||* targets:4837   UAUUCUUUAGUCCCGGUUCAAAA   4859 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054H14, full insert sequence	NA	coding protein	psRNATarget