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BaseInfo

ncRNA ID novel_osa_miR1175
Species Oryza sativa
Class miRNA
Genome position Chr5:17383144-17383229 [+]
Reference genome IRGSP-1.0
Source SRR1742993;SRR2099568
Length 24
Mature sequence(if miRNA) 63 - UACACUGUAACUUUUAGUAGAUGG - 86
Stem-loop(if miRNA) --    C    -U       C       A             GU
  AUCU ACUA  AGUUACA UGUAAUU CACUAUAGUUACA  A
  |||| ||||  ||||||| ||||||| |||||||||||||
  UAGA UGAU  UCAAUGU ACAUUAA GUGAUAUCAAUGU  C
GG    -    UU       C       A             GA
Stem-loop sequence AUCUCACUAUAGUUACACUGUAAUUACACUAUAGUUACAGUACAGUGUAACUAUAGUGAAAUUACACUGUAACUUUUAGUAGAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK243119.1
ncRNA:24   GGUAGAUG-AUUUUCAAUGUCACAU   1
  =*||-|||-||*|||||||||||||
targets:442   UAAU-UACAUAUAAGUUACAGUGUA   465

3.0 Oryza sativa Japonica Group cDNA, clone: J100028G14, full insert sequence NA coding protein psRNATarget