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BaseInfo

ncRNA ID	novel_osa_miR1173
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:6500520-6500658 [+]
Reference genome	IRGSP-1.0
Source	SRR1742993
Length	24
Mature sequence(if miRNA)	116 - UUUCUCUAUAAACUUAGUCAAACU - 139
Stem-loop(if miRNA)	--         U        AAAAAAAUAACAUUUUUAAC     ACAAA UUAUUAUCAAAAUAUAUUCAAUUAUUGAUC   UUUGACUAA UUUGUAGA                    CCAAG     U                              U   ||||||||| ||||||||                    |||||     |                              A   AAACUGAUU AAAUAUCU                    UUUAU     A                              A UC         C        -------------------C     ----- UCAUUAUAAAUAUUAUGGUUUAAUCAAAGU
Stem-loop sequence	UUUGACUAAUUUUGUAGAAAAAAAAUAACAUUUUUAACCCAAGACAAAUUUAUUAUCAAAAUAUAUUCAAUUAUUGAUCUAAUGAAACUAAUUUGGUAUUAUAAAUAUUACUAUAUUUCUCUAUAAACUUAGUCAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015758786.1	ncRNA:24   UCAAACUGAUUCAAAUAUCUCUUU   1   ||||||||||||||||||||*||| targets:2989   AGUUUGACUAAGUUUAUAGAUAAA   3012 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348279 (LOC4348279), transcript variant X2, mRNA	uncharacterized LOC4348279(LOC4348279)	coding protein	psRNATarget
CT829116.1	ncRNA:24   UCAAACUGAUUCAAAUAUCUCUUU   1   |||||||=||||||||||||*||| targets:692   AGUUUGAUUAAGUUUAUAGAAAAA   715 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA127P13, full insert sequence	NA	coding protein	psRNATarget
AK288635.1	ncRNA:24   UCAAACUGAUUCAAAUAUCUCUUU   1   |*||||||||||||||||||*||| targets:426   AAUUUGACUAAGUUUAUAGACAAA   449 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090055J05, full insert sequence	NA	coding protein	psRNATarget
AK068259.1	ncRNA:24   UCAAACUGAUUCAAAUAUCUCUUU   1   |*||||||||||||||||||*||| targets:1294   AAUUUGACUAAGUUUAUAGAAAAA   1317 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013149O16, full insert sequence	NA	coding protein	psRNATarget
AK288358.1	ncRNA:24   UCAAACUGAUUCAAAUAUCUCUUU   1   |||||*||||||||||||||*||| targets:920   AGUUUAACUAAGUUUAUAGACAAA   943 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence	NA	coding protein	psRNATarget
AK240675.1	ncRNA:24   UCAAACUGAUUCAAAUAUCUCUUU   1   |*|||||||=||||||||||*||| targets:5838   AUUUUGACUGAGUUUAUAGAAAAA   5861 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J033142I21, full insert sequence	NA	coding protein	psRNATarget
CT829512.1	ncRNA:24   UCAAACUGAUUCAAAUAUCUCUUU   1   |*||||||*|||||||||||*||| targets:1888   ACUUUGACCAAGUUUAUAGAAAAA   1911 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN044G15, full insert sequence	NA	coding protein	psRNATarget
CT830905.1	ncRNA:24   UCAAACUGAUUCAAAUAUCUCUUU   1   ||*|||||*|||||||||||*||| targets:1902   AGCUUGACCAAGUUUAUAGAAAAA   1925 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI229O14, full insert sequence	NA	coding protein	psRNATarget
AK065615.1	ncRNA:24   UCAAACUGAUUCAAAUAUCUCUUU   1   |*|||*||||||||||||||*||| targets:2869   AAUUUAACUAAGUUUAUAGACAAA   2892 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013026B17, full insert sequence	NA	coding protein	psRNATarget
AK064769.1	ncRNA:24   UCAAACUGAUUCAAAUAUCUCUUU   1   =*|||*||||||||||||||*||| targets:3934   GUUUUAACUAAGUUUAUAGAAAAA   3957 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013000A09, full insert sequence	NA	coding protein	psRNATarget