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BaseInfo

ncRNA ID	novel_osa_miR1172
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:433828-433978 [+]
Reference genome	IRGSP-1.0
Source	SRR1742993;SRR1743006;SRR4407777;SRR5049783
Length	24
Mature sequence(if miRNA)	128 - ACCUCGAGGUACUUUUUGUUGGAC - 151
Stem-loop(if miRNA)	--                   ---AC     C  C  A       A  AA        A  A      A AAUGCCC   CCAGCAAAAAGUACCUCGA     UGGUA CU AC GUACCAA UC  UUCUGAUC UU GAUCUA C       A   |||||||||||||||||||     ||||| || || ||||||| ||  |||||||| || |||||| |       U   GGUUGUUUUUCAUGGAGCU     ACCAU GA UG CAUGGUU AG  AAGGCUAG AA CUAGAU G       C CA                   CCAUA     A  C  C       -  CA        C  C      C AUCAGUU
Stem-loop sequence	CCAGCAAAAAGUACCUCGAACUGGUACCUCACAGUACCAAAUCAAUUCUGAUCAUUAGAUCUAACAAUGCCCAUCUUGACUAGCUAGAUCCAACGAUCGGAAACGAUUGGUACCGUCAGAUACCAAUACCUCGAGGUACUUUUUGUUGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235663.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   |||||||||||||||||||||||| targets:10   GUCCAACAAAAAGUACCUCGAGGU   33 Target Full Sequence	0.0	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
HI403533.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   |||||||||||||||||||||||| targets:10   GUCCAACAAAAAGUACCUCGAGGU   33 Target Full Sequence	0.0	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
JB163994.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   |||||||||||||||||||||||| targets:10   GUCCAACAAAAAGUACCUCGAGGU   33 Target Full Sequence	0.0	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015779655.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   ||||||=||||||||=|||||||| targets:1464   GUCCAAUAAAAAGUAUCUCGAGGU   1487 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget
HI404119.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   |||=||||=||||||=|||||||| targets:11   GUCUAACAGAAAGUAUCUCGAGGU   34 Target Full Sequence	2.5	Sequence 2244 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236249.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   |||=||||=||||||=|||||||| targets:11   GUCUAACAGAAAGUAUCUCGAGGU   34 Target Full Sequence	2.5	Sequence 2244 from Patent EP2985353	NA	coding protein	psRNATarget
JB164580.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   |||=||||=||||||=|||||||| targets:11   GUCUAACAGAAAGUAUCUCGAGGU   34 Target Full Sequence	2.5	Sequence 2244 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015786123.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   |||||||||||||||*|||||||| targets:620   GUCCAACAAAAAGUAACUCGAGGU   643 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
AK287529.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   |||||||||||||||*|||||||| targets:131   GUCCAACAAAAAGUAACUCGAGGU   154 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK240791.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   |||||||||||||||*|||||||| targets:131   GUCCAACAAAAAGUAACUCGAGGU   154 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK103106.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   ||||||=||||||||||||||*|| targets:1437   GUCCAAUAAAAAGUACCUCGACGU   1460 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence	NA	coding protein	psRNATarget
XM_015765802.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   ||||||=||||||||||||||*|| targets:1436   GUCCAAUAAAAAGUACCUCGACGU   1459 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA	polygalacturonase(LOC4326679)	coding protein	psRNATarget
HI403982.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   *||||=||||||*||||||||||| targets:10   AUCCAGCAAAAAAUACCUCGAGGU   33 Target Full Sequence	2.5	Sequence 2107 from Patent EP2074227	NA	coding protein	psRNATarget
JB164443.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   *||||=||||||*||||||||||| targets:10   AUCCAGCAAAAAAUACCUCGAGGU   33 Target Full Sequence	2.5	Sequence 2107 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236112.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   *||||=||||||*||||||||||| targets:10   AUCCAGCAAAAAAUACCUCGAGGU   33 Target Full Sequence	2.5	Sequence 2107 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015779289.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   *||||*|||||||||||*|||||| targets:1466   AUCCAUCAAAAAGUACCACGAGGU   1489 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X3, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
XM_015779283.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   *||||*|||||||||||*|||||| targets:1657   AUCCAUCAAAAAGUACCACGAGGU   1680 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X2, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
XM_015779276.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCCA   1   *||||*|||||||||||*|||||| targets:1664   AUCCAUCAAAAAGUACCACGAGGU   1687 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X1, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget