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BaseInfo

ncRNA ID	novel_osa_miR1168
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:27423056-27423241 [-]
Reference genome	IRGSP-1.0
Source	SRR1742993
Length	24
Mature sequence(if miRNA)	1 - ACGUUACAAAUAAAAAGUCAAAAA - 24
Stem-loop(if miRNA)	--   A G           C                 C              ----------------------U     - UAUUAUUUAUUUUGUUUGUCAUU   UUU A UUUUUGUUUGU AAUGUUUGAUUAUUCGU UUAUUUAAAAAAUU                       UAGAA U                       U   ||| | ||||||||||| ||||||||||||||||| ||||||||||||||                       ||||| |   AAA U AAAAAUAAACA UUGCAAACUAGUAAGCA AAUAAAUUUUUUGA                       CAGUA A                       G AA   C G           -                 A              UCACGUUUAUAUUUUUUUCUAUU     U CAUUUCAUUAAAACUAUUAUUUC
Stem-loop sequence	UUUAAGUUUUUGUUUGUCAAUGUUUGAUUAUUCGUCUUAUUUAAAAAAUUUUAGAAUUAUUAUUUAUUUUGUUUGUCAUUUGCUUUAUUAUCAAAAUUACUUUACAUAUGACUUAUCUUUUUUUAUAUUUGCACUAGUUUUUUAAAUAAAACGAAUGAUCAAACGUUACAAAUAAAAAGUCAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288330.1	ncRNA:24   AAAAACUGAAAAAUAAACAUUGCA   1   ||||||||||||||||||*||||| targets:1093   UUUUUGACUUUUUAUUUGCAACGU   1116 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090022I21, full insert sequence	NA	coding protein	psRNATarget
XM_015758393.1	ncRNA:24   AAAAACUGAAAAAUAAACAUUGCA   1   ||||||||||||||||||*||||| targets:1674   UUUUUGACUUUUUAUUUGCAACGU   1697 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348660 (LOC4348660), mRNA	uncharacterized LOC4348660(LOC4348660)	coding protein	psRNATarget
AK109674.1	ncRNA:24   AAAAACUGAAAAAUAAACAUUGCA   1   ||||||||||||||||||*||||| targets:1544   UUUUUGACUUUUUAUUUGCAACGU   1567 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-145-B06, full insert sequence	NA	coding protein	psRNATarget
XM_015780608.1	ncRNA:24   AAAAACUGAAAAAUAAACAUUGCA   1   *||||||=|||||=|||||||||| targets:1723   AUUUUGAUUUUUUGUUUGUAACGU   1746 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA	amino acid permease 3(LOC4336246)	coding protein	psRNATarget
AK102017.1	ncRNA:24   AAAAACUGAAAAAUAAACAUUGCA   1   *||||||*|||||=|||||||||| targets:903   GUUUUGAGUUUUUGUUUGUAACGU   926 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033080F19, full insert sequence	NA	coding protein	psRNATarget
XM_015779114.1	ncRNA:24   AAAAACUGAAAAAUAAACAUUGCA   1   *||||*|=|||||||||||||||| targets:603   AUUUUAAUUUUUUAUUUGUAACGU   626 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326202 (LOC4326202), mRNA	uncharacterized LOC4326202(LOC4326202)	coding protein	psRNATarget
AK107988.1	ncRNA:24   AAAAACUGAAAAAUAAACAUUGCA   1   *||||*|=|||||||||||||||| targets:565   AUUUUAAUUUUUUAUUUGUAACGU   588 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-135-F03, full insert sequence	NA	coding protein	psRNATarget
CT831424.1	ncRNA:24   AAAAACUGAAAAAUAAACAUUGCA   1   *||||*|=|||||||||||||||| targets:562   AUUUUAAUUUUUUAUUUGUAACGU   585 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038D01, full insert sequence	NA	coding protein	psRNATarget