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BaseInfo

ncRNA ID	novel_osa_miR1166
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:26269341-26269481 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR2098822;SRR2099568;SRR2099745;SRR1556014
Length	24
Mature sequence(if miRNA)	118 - AGAUUGUGUGUAAAUUGCGAGACG - 141
Stem-loop(if miRNA)	--     --  G                 UUCUU             C     G  -C   C     GG   U   AGAUU  GU UGUAAAUUGCGAGACGA     UUAAGCCUAAUUG UCCAU AU  UGA AGUGU  UGC A   |||||  || |||||||||||||||||     ||||||||||||| ||||| ||  ||| |||||  |||   UCUAA  CG AUAUUUGGCGCUCUGCU     AAUUCGGAUUAAU AGGUA UA  ACU UUACA  AUG C UA     GG  G                 UAAAU             U     G  AU   -     -A   A
Stem-loop sequence	AGAUUGUGUGUAAAUUGCGAGACGAUUCUUUUAAGCCUAAUUGCUCCAUGAUCUGACAGUGUGGUGCUACAGUAAACAUUUCAUAAUGAUGGAUUAAUUAGGCUUAAUAAAUUCGUCUCGCGGUUUAUAGGCGGAAUCUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015773668.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   |||||||=|||||||||||||||| targets:1814   CGUCUCGUAAUUUACACACAAUCU   1837 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269613 (LOC9269613), mRNA	uncharacterized LOC9269613(LOC9269613)	coding protein	psRNATarget
AK287702.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   =||||||||||||||||||||||| targets:1371   UGUCUCGCAAUUUACACACAAUCU   1394 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J065131D02, full insert sequence	NA	coding protein	psRNATarget
AK288806.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   |||||||=|||||||||=|||||| targets:1428   CGUCUCGUAAUUUACACGCAAUCU   1451 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090071K16, full insert sequence	NA	coding protein	psRNATarget
AK288660.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   |||||||=||||||||||=||||| targets:2435   CGUCUCGUAAUUUACACAUAAUCU   2458 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence	NA	coding protein	psRNATarget
CT837736.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   ||||||*||||||||||||||||| targets:172   CGUCUCACAAUUUACACACAAUCU   195 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M17, full insert sequence	NA	coding protein	psRNATarget
XM_015769938.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   |||||||=|||||||||||||*|| targets:1998   CGUCUCGUAAUUUACACACAAACU   2021 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X2, mRNA	OTU domain-containing protein 5-A(LOC4331162)	coding protein	psRNATarget
XM_015769937.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   |||||||=|||||||||||||*|| targets:2091   CGUCUCGUAAUUUACACACAAACU   2114 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X1, mRNA	OTU domain-containing protein 5-A(LOC4331162)	coding protein	psRNATarget
AK107289.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   |||||*|||||||||||=|||||| targets:2077   CGUCUAGCAAUUUACACGCAAUCU   2100 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-126-B09, full insert sequence	NA	coding protein	psRNATarget
AK119352.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   |||||||=|||||||||||||*|| targets:2085   CGUCUCGUAAUUUACACACAAACU   2108 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-F04, full insert sequence	NA	coding protein	psRNATarget
XM_015778499.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   |*||||||=||||||||=|||||| targets:38   CAUCUCGCGAUUUACACGCAAUCU   61 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase ERECTA (LOC4334979), transcript variant X3, mRNA	LRR receptor-like serine/threonine-protein kinase ERECTA(LOC4334979)	coding protein	psRNATarget
AK072341.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   |*|||||=|||||||||=|||||| targets:2403   CAUCUCGUAAUUUACACGCAAUCU   2426 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence	NA	coding protein	psRNATarget
AK099773.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   |*||||||=||||||||=|||||| targets:735   CAUCUCGCGAUUUACACGCAAUCU   758 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013095E04, full insert sequence	NA	coding protein	psRNATarget
AK065510.1	ncRNA:24   GCAGAGCGUUAAAUGUGUGUUAGA   1   |*||||||=||||||||=|||||| targets:805   CAUCUCGCGAUUUACACGCAAUCU   828 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013030L03, full insert sequence	NA	coding protein	psRNATarget