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BaseInfo

ncRNA ID	novel_osa_miR1157
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:29027475-29027627 [-]
Reference genome	IRGSP-1.0
Source	SRR1742993
Length	24
Mature sequence(if miRNA)	1 - AGCGGUCCAUUAGCACAUGAUUAA - 24
Stem-loop(if miRNA)	--     C                  A           G       UAC      U   UUGAAAC          U   AAUCA GUGCUAAUGGAUCGCUCC UUUUCUGUGCG GAGGGAU   UUCCCA CCC       CGAACACAGC A   ||||| |||||||||||||||||| ||||||||||| |||||||   |||||| |||       ||||||||||   UUAGU CACGAUUACCUGGCGAGG AAAAGGCACGC UUCUCUA   AAGGGU GGG       GCUUGUGUCG A AA     A                  C           G       -CC      U   UAAGGUC          G
Stem-loop sequence	AAUCACGUGCUAAUGGAUCGCUCCAUUUUCUGUGCGGGAGGGAUUACUUCCCAUCCCUUGAAACCGAACACAGCUAAGGCUGUGUUCGCUGGAAUGGGUUGGGAACCAUCUCUUGCGCACGGAAAACGGAGCGGUCCAUUAGCACAUGAUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015772459.1	ncRNA:24   AAUUAGUACACGAUUACCUGGCGA   1   |||||||||||||||||||=|||| targets:3224   UUAAUCAUGUGCUAAUGGAUCGCU   3247 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g23020 (LOC4331715), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g23020(LOC4331715)	coding protein	psRNATarget
XM_015772458.1	ncRNA:24   AAUUAGUACACGAUUACCUGGCGA   1   |||||||||||||||||||=|||| targets:3229   UUAAUCAUGUGCUAAUGGAUCGCU   3252 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g23020 (LOC4331715), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g23020(LOC4331715)	coding protein	psRNATarget
AK241447.1	ncRNA:24   AAUUAGUACACGAUUACCUGGCGA   1   |||||||||||*|||||||||||| targets:477   UUAAUCAUGUGAUAAUGGACCGCU   500 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065163F05, full insert sequence	NA	coding protein	psRNATarget
AK289139.1	ncRNA:24   AAUUAGUACACGAUUACCUGGCGA   1   |||||||*|||||||||||||||| targets:703   UUAAUCACGUGCUAAUGGACCGCU   726 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090099E06, full insert sequence	NA	coding protein	psRNATarget
AK067307.1	ncRNA:24   AAUUAGUACACGAUUACCUGGCGA   1   |||||||||*|||||||*|||||| targets:1881   UUAAUCAUGCGCUAAUGAACCGCU   1904 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013104A16, full insert sequence	NA	coding protein	psRNATarget
AK066608.1	ncRNA:24   AAUUAGUACACGAUUACCUGGCGA   1   |||||||||*|||||||*|||||| targets:2583   UUAAUCAUGCGCUAAUGAACCGCU   2606 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013074L04, full insert sequence	NA	coding protein	psRNATarget
AK288770.1	ncRNA:24   AAUUAGUACACGAUUACCUGGCGA   1   |||||||*|*|||||||||||||| targets:2155   UUAAUCACGCGCUAAUGGACCGCU   2178 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090067O18, full insert sequence	NA	coding protein	psRNATarget
AK100742.1	ncRNA:24   AAUUAGUACACGAUUACCUGGCGA   1   |||||||||*|||||||*|||||| targets:2585   UUAAUCAUGCGCUAAUGAACCGCU   2608 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023118E24, full insert sequence	NA	coding protein	psRNATarget
XM_015786303.1	ncRNA:24   AAUUAGUACACGAUUACCUGGCGA   1   |||||||***|||||||||||||| targets:1823   UUAAUCACACGCUAAUGGACCGCU   1846 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group 3-ketoacyl-CoA synthase 5 (LOC4340694), mRNA	3-ketoacyl-CoA synthase 5(LOC4340694)	coding protein	psRNATarget