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BaseInfo

ncRNA ID	novel_osa_miR1145
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:22082149-22082303 [+]
Reference genome	IRGSP-1.0
Source	SRR1742993;SRR1849767;SRR2040404
Length	24
Mature sequence(if miRNA)	132 - AUCUCGAGGUACUUUUUGUUGGAC - 155
Stem-loop(if miRNA)	--                                   A    UA   C    A A  C          A AAUUCCC   CCAAUAAAAAGUACCUCGAGGUACCGGUACCUCAC GUAC  AAU GUUU C AU GUUGGAUCUA C       A   ||||||||||||||||||||||||||||||||||| ||||  ||| |||| | || |||||||||| |       U   GGUUGUUUUUCAUGGAGCUCUAUGGCCAUGGAGUG CAUG  UUA CAAA G UA CAACCUAGAU G       C CA                                   C    GC   A    G C  U          C ACCCGUC
Stem-loop sequence	CCAAUAAAAAGUACCUCGAGGUACCGGUACCUCACAGUACUAAAUCGUUUACAAUCGUUGGAUCUAACAAUUCCCAUCCUGCCCAGCUAGAUCCAACUAUCGGAAACAAUUCGGUACCGUGAGGUACCGGUAUCUCGAGGUACUUUUUGUUGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403533.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCUA   1   ||||||||||||||||||||||=| targets:10   GUCCAACAAAAAGUACCUCGAGGU   33 Target Full Sequence	1.5	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235663.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCUA   1   ||||||||||||||||||||||=| targets:10   GUCCAACAAAAAGUACCUCGAGGU   33 Target Full Sequence	1.5	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
JB163994.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCUA   1   ||||||||||||||||||||||=| targets:10   GUCCAACAAAAAGUACCUCGAGGU   33 Target Full Sequence	1.5	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
AK107667.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCUA   1   ||||||||||||*||||||||||| targets:1055   GUCCAACAAAAAAUACCUCGAGAU   1078 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-131-H04, full insert sequence	NA	coding protein	psRNATarget
XM_015755204.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCUA   1   ||||||||||||*||||||||||| targets:1102   GUCCAACAAAAAAUACCUCGAGAU   1125 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347453 (LOC4347453), mRNA	uncharacterized LOC4347453(LOC4347453)	coding protein	psRNATarget
XM_015794267.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCUA   1   *||*=|=||||||*|||||||||| targets:759   UUCGGAUAAAAAGGACCUCGAGAU   782 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GTE9 (LOC4344569), mRNA	transcription factor GTE9(LOC4344569)	coding protein	psRNATarget