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BaseInfo

ncRNA ID novel_osa_miR1144
Species Oryza sativa
Class miRNA
Genome position Chr2:215530-215702 [+]
Reference genome IRGSP-1.0
Source SRR1742993;SRR1742996;SRR1743000;SRR1743002;SRR1849781;SRR1849784;SRR2040380;SRR2040381;SRR2040384;SRR2040388;SRR2040391;SRR2040392;SRR2040393;SRR2040395;SRR2040396;SRR2040397;SRR2040398;SRR2040399;SRR2040400;SRR2040401;SRR2040404;SRR2040405;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR2040411;SRR2857728;SRR2857729;SRR2857731;SRR2857732;SRR3123630;SRR3123650;SRR1738225;SRR1738239
Length 21
Mature sequence(if miRNA) 1 - UUUUGUUUGUAACGUUUGACC - 21
Stem-loop(if miRNA) ----    G                      C     C     A   -  G  U     UU   --UUU   UGUG     UUU    AC
    UUUU UUUGUAACGUUUGACCAUUCGU UUAUU AAAAG UUA UG AA UAUAA  AAU     GUU    ACUUG   UAUU  U
    |||| |||||||||||||||||||||| ||||| ||||| ||| || || |||||  |||     |||    |||||   ||||
    AAAA GAACAUUGCAAACUGGUAAGCA AAUAA UUUUU AAU AC UU AUAUU  UUA     CAG    UGAAU   AUAA  A
CGAA    A                      A     A     A   U  G  U     UU   CUAUU   --UA     UUU    AA
Stem-loop sequence UUUUGUUUGUAACGUUUGACCAUUCGUCUUAUUCAAAAGAUUAUGGAAUUAUAAUUAAUUUUGUUUGUGACUUGUUUUAUUACUAAAAAUAUUUUAAGUAUGACUUAUCAUUUUUUAUAUUUGCAUUAAAUUUUUAAAUAAAACGAAUGGUCAAACGUUACAAGAAAAAAAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403666.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:153   GGUCAAACGUUACAAACAAAA   173

0.0 Sequence 1791 from Patent EP2074227 NA coding protein psRNATarget
JB164127.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:153   GGUCAAACGUUACAAACAAAA   173

0.0 Sequence 1791 from Patent EP2559767 NA coding protein psRNATarget
LQ235796.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:153   GGUCAAACGUUACAAACAAAA   173

0.0 Sequence 1791 from Patent EP2985353 NA coding protein psRNATarget
HI404009.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:156   GGUCAAACGUUACAAACAAAA   176

0.0 Sequence 2134 from Patent EP2074227 NA coding protein psRNATarget
JB164470.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:156   GGUCAAACGUUACAAACAAAA   176

0.0 Sequence 2134 from Patent EP2559767 NA coding protein psRNATarget
LQ236139.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:156   GGUCAAACGUUACAAACAAAA   176

0.0 Sequence 2134 from Patent EP2985353 NA coding protein psRNATarget
LQ235858.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:159   GGUCAAACGUUACAAACAAAA   179

0.0 Sequence 1853 from Patent EP2985353 NA coding protein psRNATarget
JB164189.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:159   GGUCAAACGUUACAAACAAAA   179

0.0 Sequence 1853 from Patent EP2559767 NA coding protein psRNATarget
HI403728.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:159   GGUCAAACGUUACAAACAAAA   179

0.0 Sequence 1853 from Patent EP2074227 NA coding protein psRNATarget
CT831424.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:719   GGUCAAACGUUACAAACAAAA   739

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038D01, full insert sequence NA coding protein psRNATarget
AK107988.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:721   GGUCAAACGUUACAAACAAAA   741

0.0 Oryza sativa Japonica Group cDNA clone:002-135-F03, full insert sequence NA coding protein psRNATarget
XM_015779114.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:759   GGUCAAACGUUACAAACAAAA   779

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326202 (LOC4326202), mRNA uncharacterized LOC4326202(LOC4326202) coding protein psRNATarget
XM_015780608.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:1787   GGUCAAACGUUACAAACAAAA   1807

0.0 PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA amino acid permease 3(LOC4336246) coding protein psRNATarget
AK288465.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||||||||||||||||
targets:830   GGUCAAACGUUACAAACAAAA   850

0.0 Oryza sativa Japonica Group cDNA, clone: J090036M08, full insert sequence NA coding protein psRNATarget
AK065068.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||=||||||||*||||
targets:1262   GGUCAAAUGUUACAAAAAAAA   1282

2.5 Oryza sativa Japonica Group cDNA clone:J013001K02, full insert sequence NA coding protein psRNATarget
AK100378.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |||||||=||||||||*||||
targets:1537   GGUCAAAUGUUACAAAAAAAA   1557

2.5 Oryza sativa Japonica Group cDNA clone:J023085B20, full insert sequence NA coding protein psRNATarget
CT828587.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  *||||||||||||*||||||=
targets:368   CGUCAAACGUUACUAACAAAG   388

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA127J23, full insert sequence NA coding protein psRNATarget
XM_015761823.1
ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1
  |**||||||*|||||||||||
targets:23   GACCAAACGCUACAAACAAAA   43

2.5 PREDICTED: Oryza sativa Japonica Group tetracycline resistance protein, class A (LOC4349793), mRNA tetracycline resistance protein, class A(LOC4349793) coding protein psRNATarget
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