ncRNA ID | ath-miR832-5p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:6413010-6413342 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 50 - UGCUGGGAUCGGGAAUCGAAA - 70 |
Stem-loop(if miRNA) |
AAG    AAAAAAUAA  GACAAGUAACAAACAUGAGAAAGGUGAAACUUGCUGGGAUCGGGAAUCGAAAGAUCCGAAAGCCAGUCUUUAGAGGAUUCUGAACGGGCUAGUGAAAGUAAACUUGUGAUGUGACCAUAUUGUGCAAUAUGAAUGUAAGUUGGUGGUGUGGUC    AAAG         GU                                                                                                                                                         A    ||||         ||                                                                                                                                                         U    GUUU         UA                                                                                                                                                         C ---    ---------  AACCUAUAAAACAUUUCCAGUACCGUUUUUUUUUCCACUUGGAACGAACCUAACCCUUAGUUUUCUACGCUUUCCGUUCGAAGUUCUUCUACUACGAUUUGCCCGACUACGAAAGCAAUUCUUUUAUUCACUCUACUGAAUCGGUGGAACACU |
Stem-loop sequence | AAGAAAGAAAAAAUAAGUGACAAGUAACAAACAUGAGAAAGGUGAAACUUGCUGGGAUCGGGAAUCGAAAGAUCCGAAAGCCAGUCUUUAGAGGAUUCUGAACGGGCUAGUGAAAGUAAACUUGUGAUGUGACCAUAUUGUGCAAUAUGAAUGUAAGUUGGUGGUGUGGUCAUCUCACAAGGUGGCUAAGUCAUCUCACUUAUUUUCUUAACGAAAGCAUCAGCCCGUUUAGCAUCAUCUUCUUGAAGCUUGCCUUUCGCAUCUUUUGAUUCCCAAUCCAAGCAAGGUUCACCUUUUUUUUUGCCAUGACCUUUACAAAAUAUCCAAAUUUUG |
1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |