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BaseInfo

ncRNA ID ath-miR832-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:6413010-6413342 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 50 - UGCUGGGAUCGGGAAUCGAAA - 70
Stem-loop(if miRNA) AAG    AAAAAAUAA  GACAAGUAACAAACAUGAGAAAGGUGAAACUUGCUGGGAUCGGGAAUCGAAAGAUCCGAAAGCCAGUCUUUAGAGGAUUCUGAACGGGCUAGUGAAAGUAAACUUGUGAUGUGACCAUAUUGUGCAAUAUGAAUGUAAGUUGGUGGUGUGGUC
   AAAG         GU                                                                                                                                                         A
   ||||         ||                                                                                                                                                         U
   GUUU         UA                                                                                                                                                         C
---    ---------  AACCUAUAAAACAUUUCCAGUACCGUUUUUUUUUCCACUUGGAACGAACCUAACCCUUAGUUUUCUACGCUUUCCGUUCGAAGUUCUUCUACUACGAUUUGCCCGACUACGAAAGCAAUUCUUUUAUUCACUCUACUGAAUCGGUGGAACACU
Stem-loop sequence AAGAAAGAAAAAAUAAGUGACAAGUAACAAACAUGAGAAAGGUGAAACUUGCUGGGAUCGGGAAUCGAAAGAUCCGAAAGCCAGUCUUUAGAGGAUUCUGAACGGGCUAGUGAAAGUAAACUUGUGAUGUGACCAUAUUGUGCAAUAUGAAUGUAAGUUGGUGGUGUGGUCAUCUCACAAGGUGGCUAAGUCAUCUCACUUAUUUUCUUAACGAAAGCAUCAGCCCGUUUAGCAUCAUCUUCUUGAAGCUUGCCUUUCGCAUCUUUUGAUUCCCAAUCCAAGCAAGGUUCACCUUUUUUUUUGCCAUGACCUUUACAAAAUAUCCAAAUUUUG

Reference

1 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).