Search result

BaseInfo

ncRNA ID	novel_osa_miR1136
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:16710205-16710392 [+]
Reference genome	IRGSP-1.0
Source	SRR1742993;SRR1738241
Length	24
Mature sequence(if miRNA)	165 - AGCCGAUCGAGUAGAUUUAGUCCU - 188
Stem-loop(if miRNA)	--UG         UC         -AU C   A    -UU       AUAU   UA          C    U        UAUACUAUC    CAU     UUAGAUCUA  UGAUCGGCU   G UGU AACA   UAUAAUC    UGU  AUAUAUAUUU GAUC AAGUGAUU         UCGG   G     |||||||||  |||||||||   | ||| ||||   |||||||    |||  |||||||||| |||| ||||||||         ||||     GAUUUAGAU  GCUAGCCGA   C AUA UUGU   AUAUUAG    ACA  UAUAUAUGAA UUAG UUCACUAA         AGCC   G UCCU         GA         CAU C   A    UAU       GAAU   GC          U    -        -CCCUAUCU    AGC
Stem-loop sequence	UGUUAGAUCUAUCUGAUCGGCUAUGCUGUAAACAUUUAUAAUCAUAUUGUUAAUAUAUAUUUCGAUCUAAGUGAUUUAUACUAUCUCGGCAUGGCGACCGAUCUAUCCCAAUCACUUGAUUUAAGUAUAUAUCGACAUAAGGAUUAUAUAUUGUUAAUACCUACAGCCGAUCGAGUAGAUUUAGUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288913.1	ncRNA:24   UCCUGAUUUAGAUGAGCUAGCCGA   1   |||||||||||||=|||||||||| targets:1456   AGGACUAAAUCUAUUCGAUCGGCU   1479 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081H11, full insert sequence	NA	coding protein	psRNATarget
AK121353.1	ncRNA:24   UCCUGAUUUAGAUGAGCUAGCCGA   1   ||*||||||||||||||||||||| targets:1015   AGAACUAAAUCUACUCGAUCGGCU   1038 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023122B16, full insert sequence	NA	coding protein	psRNATarget
AK288616.1	ncRNA:24   UCCUGAUUUAGAUGAGCUAGCCGA   1   ||*||*|||||||||||||||||| targets:1977   AGAACAAAAUCUACUCGAUCGGCU   2000 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090054A10, full insert sequence	NA	coding protein	psRNATarget
AK288188.1	ncRNA:24   UCCUGAUUUAGAUGAGCUAGCCGA   1   **|=||=||*=||||||||||||| targets:858   UCGGCUGAAAUUACUCGAUCGGCU   881 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090006H06, full insert sequence	NA	coding protein	psRNATarget
XM_015760940.1	ncRNA:24   UCCUGAUUUAGAUGAGCUAGCCGA   1   |**|=||=||*||||||||||||| targets:1058   AUUAUUAGAUAUACUCGAUCGGCU   1081 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279417 (LOC107279417), transcript variant X1, mRNA	uncharacterized LOC107279417(LOC107279417)	coding protein	psRNATarget
XM_015760941.1	ncRNA:24   UCCUGAUUUAGAUGAGCUAGCCGA   1   |**|=||=||*||||||||||||| targets:1079   AUUAUUAGAUAUACUCGAUCGGCU   1102 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279417 (LOC107279417), transcript variant X2, mRNA	uncharacterized LOC107279417(LOC107279417)	coding protein	psRNATarget
AK289092.1	ncRNA:24   UCCUGAUUUAGAUGAGCUAGCCGA   1   |**|||||||*|||||||*||||| targets:173   AAAACUAAAUAUACUCGAGCGGCU   196 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096B09, full insert sequence	NA	coding protein	psRNATarget