A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_osa_miR1135
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:16231723-16231950 [+]
Reference genome	IRGSP-1.0
Source	SRR1742993
Length	24
Mature sequence(if miRNA)	1 - GUAGAAAUGACCAAAAUAAAAGUU - 24
Stem-loop(if miRNA)	-- G CC AAUA C UC A U U U G C C UU -AA UUU ACCUCAAUUUUUAUUCGAAGUUGUUA GUAGAAAU A AA AAAGUUUUG A UUG UGAG UCUACAAUU UUGU UUGGU A UUUU CA UGA UCA AUUA A \|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \| \|\|\|\| \|\| \|\|\| \|\|\| \|\|\|\| CGUUUUUA U UU UUUUAAAAU U AGU GCUC AGAUGUUGA AACA AACCA U AAAA GU AUU GUA GACU U UA G AU GUUG U UA A U U U G A U UU CAA --- UGUUAAGUUUACAAAUUAAAAGUUUU
Stem-loop sequence	GUAGAAAUGACCAAAAUAAAAGUUUUGCAUCUUGAUGAGUUCUACAAUUUUUGUUUUGGUGACUUUUCCAUUUGAAAUCAUUUAUUAACCUCAAUUUUUAUUCGAAGUUGUUAAUUUUUGAAAAUUAAACAUUUGAAUUGUUCAGAUGAACUUAUUUGUAAAAAUGACCAAUACAAUAGUUGUAGAUCUCGAUGAAUUUUAAAAUUUUGUUGUUUAUGAUUUUUGCAU

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

CT831299.1

2.5

Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA205E03, full insert sequence

coding protein

HI403566.1

2.5

Sequence 1691 from Patent EP2074227

coding protein

JB164027.1

2.5

Sequence 1691 from Patent EP2559767

coding protein

LQ235696.1

2.5

Sequence 1691 from Patent EP2985353

coding protein