Search result

BaseInfo

ncRNA ID	novel_osa_miR1126
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:9572317-9572497 [+]
Reference genome	IRGSP-1.0
Source	SRR1742993;SRR1849766;SRR1849767;SRR1849768;SRR1849769;SRR1849772;SRR1849775;SRR1849776;SRR2040380;SRR2040381;SRR2040383;SRR2040384;SRR2040385;SRR2040386;SRR2040388;SRR2040389;SRR2040390;SRR2040392;SRR2040394;SRR2040395;SRR2040397;SRR2040398;SRR2040400;SRR2040402;SRR2040403;SRR2040405;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR2040410;SRR2040411;SRR2857733;SRR1738222
Length	24
Mature sequence(if miRNA)	158 - AAACGUUGUAAGUAAAAACUCAAA - 181
Stem-loop(if miRNA)	--UC                                    ----------------------------CAA     -    GCAAAUAUAAAAAAUAAAAAGUUG     AGUUUUUGCUUGCAACGUUUGACCACUCGUCUUAUU                               UUUUA UUUU                        U     ||||||||||||||||||||||||||||||||||||                               ||||| ||||     UCAAAAAUGAAUGUUGCAAACUGGUGAGCAGAAUAA                               AACAC GAAU                        G AAAC                                    AUUUUAAAAAACUUUAAUAAUUAAUUAAAUA     U    GAAAUAAUAGAUAUCAUGAAAUUC
Stem-loop sequence	UCAGUUUUUGCUUGCAACGUUUGACCACUCGUCUUAUUCAAUUUUAUUUUGCAAAUAUAAAAAAUAAAAAGUUGUGCUUAAAGUACUAUAGAUAAUAAAGUAAGUCACAAAUAAAUUAAUUAAUAAUUUCAAAAAAUUUUAAAUAAGACGAGUGGUCAAACGUUGUAAGUAAAAACUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289013.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||||||=|||||||| targets:3847   UUUGAGUUUUUACUUGCAACGUUU   3870 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||||||=|||||||| targets:3902   UUUGAGUUUUUACUUGCAACGUUU   3925 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
XM_015763075.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||=|||||||||||| targets:2835   UUUGAGUUUUUGCUUACAACGUUU   2858 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
AK288652.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||*||||||||||||||*||| targets:1195   UUUGAAUUUUUACUUACAACAUUU   1218 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090056N01, full insert sequence	NA	coding protein	psRNATarget