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BaseInfo

ncRNA ID	novel_osa_miR1117
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:18914059-18914243 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1555747;SRR1556014;SRR4407961;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AACCUGAAAACUAUCGUUGGAUAA - 24
Stem-loop(if miRNA)	--   C                  AAAA     UG  AUA            A   C  CU                      -UAA    UUC   AAC UGAAAACUAUCGUUGGAU    AAAAU  GC   UGAGAUUUGUUC CGU AU  UAAGUAAAACUUUUACUCCCGG    AACA   C   ||| ||||||||||||||||||    |||||  ||   |||||||||||| ||| ||  ||||||||||||||||||||||    ||||   C   UUG ACUUUUGAUGGCAAUUUA    UUUUA  UG   ACUCUAAACAGG GCA UG  AUUCAUUUUGAAAAUGAGGGCC    UUGU   U AA   U                  ---G     UU  CAA            C   A  AG                      UAAA    UGC
Stem-loop sequence	AACCUGAAAACUAUCGUUGGAUAAAAAAAAUUGGCAUAUGAGAUUUGUUCACGUCAUCUUAAGUAAAACUUUUACUCCCGGUAAAACAUUCCCUCGUUGUUAAAUCCGGGAGUAAAAGUUUUACUUAGAGUAACGCGGACAAAUCUCAAACGUUUAUUUUGAUUUAACGGUAGUUUUCAUGUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015787322.1	ncRNA:24   AAUAGGUUGCUAUCAAAAGUCCAA   1   ||||||*|||=||||||||||||| targets:2302   UUAUCCUACGGUAGUUUUCAGGUU   2325 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group transcription factor SPEECHLESS (LOC9268477), mRNA	transcription factor SPEECHLESS(LOC9268477)	coding protein	psRNATarget
AK287482.1	ncRNA:24   AAUAGGUUGCUAUCAAAAGUCCAA   1   ||||||*|||=||||||||||||| targets:2303   UUAUCCUACGGUAGUUUUCAGGUU   2326 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J043025B18, full insert sequence	NA	coding protein	psRNATarget
CT836406.1	ncRNA:24   AAU-AGGUUGCUAUCAAAAGUCCAA   1   |||-||=*||||||||||||||||| targets:78   UUAAUCUUACGAUAGUUUUCAGGUU   102 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110G01, full insert sequence	NA	coding protein	psRNATarget
AK242184.1	ncRNA:24   AAU-AGGUUGCUAUCAAAAGUCCAA   1   |||-||=*||||||||||||||||| targets:1087   UUAAUCUUACGAUAGUUUUCAGGUU   1111 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J075161E10, full insert sequence	NA	coding protein	psRNATarget
XM_015783848.1	ncRNA:24   AAU-AGGUUGCUAUCAAAAGUCCAA   1   |||-||=*||||||||||||||||| targets:1086   UUAAUCUUACGAUAGUUUUCAGGUU   1110 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339816 (LOC4339816), mRNA	uncharacterized LOC4339816(LOC4339816)	coding protein	psRNATarget
XM_015772457.1	ncRNA:24   AAU-AGGUUGCUAUCAAAAGUCCAA   1   |||-|||||*|||||||||=||||| targets:3205   UUAAUCCAAAGAUAGUUUUUAGGUU   3229 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g53700, chloroplastic (LOC4334414), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g53700, chloroplastic(LOC4334414)	coding protein	psRNATarget
XM_015772456.1	ncRNA:24   AAU-AGGUUGCUAUCAAAAGUCCAA   1   |||-|||||*|||||||||=||||| targets:3271   UUAAUCCAAAGAUAGUUUUUAGGUU   3295 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g53700, chloroplastic (LOC4334414), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g53700, chloroplastic(LOC4334414)	coding protein	psRNATarget
XM_015780631.1	ncRNA:24   AAU--AGGUUGCUAUCAAAAGUCCAA   1   |||--||||||*||||||||=||||| targets:1837   UUAAAUCCAACAAUAGUUUUUAGGUU   1862 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative adenylate cyclase regulatory protein (LOC4337039), transcript variant X2, mRNA	putative adenylate cyclase regulatory protein(LOC4337039)	coding protein	psRNATarget
AK288361.1	ncRNA:24   AAU--AGGUUGCUAUCAAAAGUCCAA   1   |||--||||||*||||||||=||||| targets:1725   UUAAAUCCAACAAUAGUUUUUAGGUU   1750 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090025B15, full insert sequence	NA	coding protein	psRNATarget
AK288232.1	ncRNA:24   AAU--AGGUUGCUAUCAAAAGUCCAA   1   |||--||||||*|||||||*|||||| targets:740   UUAGAUCCAACUAUAGUUUCCAGGUU   765 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012P03, full insert sequence	NA	coding protein	psRNATarget