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BaseInfo

ncRNA ID novel_osa_miR1108
Species Oryza sativa
Class miRNA
Genome position Chr11:20541519-20541601 [+]
Reference genome IRGSP-1.0
Source SRR1742993;SRR1654490;SRR1654491;SRR1738210
Length 21
Mature sequence(if miRNA) 1 - ACCAAAUUGUUUCCGAUCGUU - 21
Stem-loop(if miRNA) --  C             U           UCAAU  CUAU
  AC AAAUUGUUUCCGA CGUUGGAUCUA     GC    C
  || ||||||||||||| |||||||||||     ||    C
  UG UUUAACAAAGGCU GCAACCUAGAU     CG    U
CA  A             U           UGAUC  CCCG
Stem-loop sequence ACCAAAUUGUUUCCGAUCGUUGGAUCUAUCAAUGCCUAUCCUGCCCGCCUAGUUAGAUCCAACGUUCGGAAACAAUUUAGUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB164580.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  ||||||||||||=||||||||
targets:107   AACGAUCGGAAAUAAUUUGGU   127

1.5 Sequence 2244 from Patent EP2559767 NA coding protein psRNATarget
HI404119.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  ||||||||||||=||||||||
targets:107   AACGAUCGGAAAUAAUUUGGU   127

1.5 Sequence 2244 from Patent EP2074227 NA coding protein psRNATarget
LQ236249.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  ||||||||||||=||||||||
targets:107   AACGAUCGGAAAUAAUUUGGU   127

1.5 Sequence 2244 from Patent EP2985353 NA coding protein psRNATarget
AK103106.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  ||||||||||||=||||||||
targets:1494   AACGAUCGGAAAUAAUUUGGU   1514

1.5 Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence NA coding protein psRNATarget
XM_015765802.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  ||||||||||||=||||||||
targets:1493   AACGAUCGGAAAUAAUUUGGU   1513

1.5 PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA polygalacturonase(LOC4326679) coding protein psRNATarget
XM_015778221.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  |||||||||||||=|||||||
targets:3065   AACGAUCGGAAACGAUUUGGU   3085

1.5 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
XM_015778220.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  |||||||||||||=|||||||
targets:3116   AACGAUCGGAAACGAUUUGGU   3136

1.5 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
AK063705.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  |=||||=||||||||||||||
targets:580   AGCGAUUGGAAACAAUUUGGU   600

1.0 Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence NA coding protein psRNATarget
EF626940.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  |=||||=||||||||||||||
targets:1086   AGCGAUUGGAAACAAUUUGGU   1106

1.0 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds NA coding protein psRNATarget
JB164466.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  *||||||||||||=|||||||
targets:25   CACGAUCGGAAACGAUUUGGU   45

1.5 Sequence 2130 from Patent EP2559767 NA coding protein psRNATarget
LQ236135.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  *||||||||||||=|||||||
targets:25   CACGAUCGGAAACGAUUUGGU   45

1.5 Sequence 2130 from Patent EP2985353 NA coding protein psRNATarget
HI404005.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  *||||||||||||=|||||||
targets:25   CACGAUCGGAAACGAUUUGGU   45

1.5 Sequence 2130 from Patent EP2074227 NA coding protein psRNATarget
XM_015755547.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  |=||||=||||||||||||||
targets:1561   AGCGAUUGGAAACAAUUUGGU   1581

1.0 PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA zinc finger protein WIP2(LOC4347420) coding protein psRNATarget
AK288361.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  ||||||=||||||=|||||||
targets:2993   AACGAUUGGAAACGAUUUGGU   3013

2.5 Oryza sativa Japonica Group cDNA, clone: J090025B15, full insert sequence NA coding protein psRNATarget
JB163994.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  ||||||||||||||||||*||
targets:63   AACGAUCGGAAACAAUUUAGU   83

1.5 Sequence 1658 from Patent EP2559767 NA coding protein psRNATarget
LQ235663.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  ||||||||||||||||||*||
targets:63   AACGAUCGGAAACAAUUUAGU   83

1.5 Sequence 1658 from Patent EP2985353 NA coding protein psRNATarget
HI403533.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  ||||||||||||||||||*||
targets:63   AACGAUCGGAAACAAUUUAGU   83

1.5 Sequence 1658 from Patent EP2074227 NA coding protein psRNATarget
LQ236069.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  ||||||=|*||||||||||||
targets:74   AACGAUUGAAAACAAUUUGGU   94

2.5 Sequence 2064 from Patent EP2985353 NA coding protein psRNATarget
HI403939.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  ||||||=|*||||||||||||
targets:74   AACGAUUGAAAACAAUUUGGU   94

2.5 Sequence 2064 from Patent EP2074227 NA coding protein psRNATarget
JB164400.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  ||||||=|*||||||||||||
targets:74   AACGAUUGAAAACAAUUUGGU   94

2.5 Sequence 2064 from Patent EP2559767 NA coding protein psRNATarget
JB164892.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  |||*||=||||||||||||||
targets:102   AACAAUUGGAAACAAUUUGGU   122

2.0 Sequence 2556 from Patent EP2559767 NA coding protein psRNATarget
HI404431.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  |||*||=||||||||||||||
targets:102   AACAAUUGGAAACAAUUUGGU   122

2.0 Sequence 2556 from Patent EP2074227 NA coding protein psRNATarget
LQ236561.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  |||*||=||||||||||||||
targets:102   AACAAUUGGAAACAAUUUGGU   122

2.0 Sequence 2556 from Patent EP2985353 NA coding protein psRNATarget
AK072639.1
ncRNA:21   UUGCUAGCCUUUGUUAAACCA   1
  **|*||||||||||*||||||
targets:1223   CUCCAUCGGAAACAUUUUGGU   1243

2.5 Oryza sativa Japonica Group cDNA clone:J023133I20, full insert sequence NA coding protein psRNATarget
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