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BaseInfo

ncRNA ID novel_osa_miR1098
Species Oryza sativa
Class miRNA
Genome position Chr9:16951830-16951924 [+]
Reference genome IRGSP-1.0
Source SRR1742992;SRR1849773;SRR2040384;SRR2040393;SRR2040401;SRR1555749;SRR1298758;SRR2098560;SRR2099567;SRR2099745;SRR1556011;SRR2857728;SRR2857729;SRR3123646;SRR3123651;SRR3234040;SRR3234042;SRR3234045;SRR4407777;SRR4407953;SRR4407957;SRR1556016;SRR5049781;SRR1300837;SRR1738210;SRR1738228;SRR1460507;SRR1738240
Length 21
Mature sequence(if miRNA) 75 - UCGGACCAGGCUUCAAUCCCU - 95
Stem-loop(if miRNA) --      UU         A     U   --   --     -AAA   UU
  GGAUUG  GUCUGGUUC AGGUC CCA  CAU  UGUGC    AUG  C
  ||||||  ||||||||| ||||| |||  |||  |||||    |||
  CCUAAC  CGGACCAGG UCUAG GGU  GUA  ACACG    UAC  A
UC      UU         C     U   UC   GG     GAGG   UU
Stem-loop sequence GGAUUGUUGUCUGGUUCAAGGUCUCCACAUUGUGCAAAAUGUUCAUUCAUGGAGGCACAGGAUGCUUGGUGAUCUCGGACCAGGCUUCAAUCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288397.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =*|||*|||||||||*|||||
targets:1245   GAGGAAUGAAGCCUGAUCCGA   1265

2.5 Oryza sativa Japonica Group cDNA, clone: J090028B18, full insert sequence NA coding protein psRNATarget