ncRNA ID | novel_osa_miR1098 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr9:16951830-16951924 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1742992;SRR1849773;SRR2040384;SRR2040393;SRR2040401;SRR1555749;SRR1298758;SRR2098560;SRR2099567;SRR2099745;SRR1556011;SRR2857728;SRR2857729;SRR3123646;SRR3123651;SRR3234040;SRR3234042;SRR3234045;SRR4407777;SRR4407953;SRR4407957;SRR1556016;SRR5049781;SRR1300837;SRR1738210;SRR1738228;SRR1460507;SRR1738240 |
Length | 21 |
Mature sequence(if miRNA) | 75 - UCGGACCAGGCUUCAAUCCCU - 95 |
Stem-loop(if miRNA) |
--      UU         A     U   --   --     -AAA   UU   GGAUUG  GUCUGGUUC AGGUC CCA  CAU  UGUGC    AUG  C   ||||||  ||||||||| ||||| |||  |||  |||||    |||   CCUAAC  CGGACCAGG UCUAG GGU  GUA  ACACG    UAC  A UC      UU         C     U   UC   GG     GAGG   UU |
Stem-loop sequence | GGAUUGUUGUCUGGUUCAAGGUCUCCACAUUGUGCAAAAUGUUCAUUCAUGGAGGCACAGGAUGCUUGGUGAUCUCGGACCAGGCUUCAAUCCCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288397.1 |
|
2.5 | Oryza sativa Japonica Group cDNA, clone: J090028B18, full insert sequence | NA | coding protein | psRNATarget |