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BaseInfo

ncRNA ID novel_osa_miR1094
Species Oryza sativa
Class miRNA
Genome position Chr9:10194472-10194613 [+]
Reference genome IRGSP-1.0
Source SRR1742992;SRR4407953;SRR4407960
Length 24
Mature sequence(if miRNA) 1 - AGAUUAAUCUAUCUCAAUCGGGCA - 24
Stem-loop(if miRNA) --               A           C           GG  U  -AU      UCAAU     AUUA
  AGAUUAAUCUAUCUC AUCGGGCAUUA CAUAGGGCCCG  AU GA   GUUAUC     CGGGC    G
  ||||||||||||||| ||||||||||| |||||||||||  || ||   ||||||     |||||    U
  UCUAAUUAGAUAGAG UAGCCCGUAAU GUAUCUCGGGC  UA CU   CAGUAG     GCCCG    A
UC               A           A           AG  U  ACU      CCACU     AGGU
Stem-loop sequence AGAUUAAUCUAUCUCAAUCGGGCAUUACCAUAGGGCCCGGGAUUGAAUGUUAUCUCAAUCGGGCAUUAGUAUGGAGCCCGUCACCGAUGACUCAUCUAUGACGGGCUCUAUGAUAAUGCCCGAUAGAGAUAGAUUAAUCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB164237.1
ncRNA:24   ACGGGCUAACUCUAUCUAAUUAGA   1
  *|||||||||||||||||||||||
targets:109   AGCCCGAUUGAGAUAGAUUAAUCU   132

0.0 Sequence 1901 from Patent EP2559767 NA coding protein psRNATarget
LQ235906.1
ncRNA:24   ACGGGCUAACUCUAUCUAAUUAGA   1
  *|||||||||||||||||||||||
targets:109   AGCCCGAUUGAGAUAGAUUAAUCU   132

0.0 Sequence 1901 from Patent EP2985353 NA coding protein psRNATarget
HI403776.1
ncRNA:24   ACGGGCUAACUCUAUCUAAUUAGA   1
  *|||||||||||||||||||||||
targets:109   AGCCCGAUUGAGAUAGAUUAAUCU   132

0.0 Sequence 1901 from Patent EP2074227 NA coding protein psRNATarget