Search result

BaseInfo

ncRNA ID	novel_osa_miR1085
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:11313817-11313897 [+]
Reference genome	IRGSP-1.0
Source	SRR1742992
Length	24
Mature sequence(if miRNA)	1 - UCAACCAGAUUCAUCGUGAUUAGU - 24
Stem-loop(if miRNA)	--        AU     GU     -   -UC        UAU   UCAACCAG  UCAUC  GAUUA GUC   AUCAUUAA   U   ||||||||  |||||  ||||| |||   ||||||||   U   GGUUGGUU  GGUGG  UUGAU UAG   UGGUAAUU   U CG        --     GC     A   UCA        CAG
Stem-loop sequence	UCAACCAGAUUCAUCGUGAUUAGUCUCAUCAUUAAUAUUUUGACUUAAUGGUACUGAUAUAGUUCGGGUGGUUGGUUGGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK109178.1	ncRNA:24   UGAUUAGUGCUACUUAGACCAACU   1   ||||||||||=||||||||||||| targets:31   ACUAAUCACGGUGAAUCUGGUUGA   54 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-156-A01, full insert sequence	NA	coding protein	psRNATarget
AK289258.1	ncRNA:24   UGAUUAGUGCUACUUAGACCAACU   1   ||||||||||=||||||||||||| targets:8   ACUAAUCACGGUGAAUCUGGUUGA   31 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J100083K01, full insert sequence	NA	coding protein	psRNATarget
AK288573.1	ncRNA:24   UGAUUAGUGCUACUUAGACCAACU   1   ||||||||||=||||||||||||| targets:1212   ACUAAUCACGGUGAAUCUGGUUGA   1235 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090048H20, full insert sequence	NA	coding protein	psRNATarget
AK288391.1	ncRNA:24   UGAUUAGUGCUACUUAGACCAACU   1   ||||||||||=||||||||||||| targets:2315   ACUAAUCACGGUGAAUCUGGUUGA   2338 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090027H03, full insert sequence	NA	coding protein	psRNATarget
AK288246.1	ncRNA:24   UGAUUAGUGCUACUUAGACCAACU   1   ||||||||||=||||||||||*|| targets:2638   ACUAAUCACGGUGAAUCUGGUCGA   2661 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090014G12, full insert sequence	NA	coding protein	psRNATarget
AK288585.1	ncRNA:24   UGAUUAGUGCUACUUAGACCAACU   1   ||||||||||=||||||*|||||| targets:2182   ACUAAUCACGGUGAAUCAGGUUGA   2205 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090049P09, full insert sequence	NA	coding protein	psRNATarget