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BaseInfo

ncRNA ID	novel_osa_miR1066
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:12878406-12878551 [+]
Reference genome	IRGSP-1.0
Source	SRR1742992
Length	24
Mature sequence(if miRNA)	1 - UUGGUCAUUUCUUUAUCUGACAAA - 24
Stem-loop(if miRNA)	--             U   UG     A     G   C         A  A         CCCUCU       U   UUGGUCAUUUCUU AUC  ACAAA UGAUA UAA AUUGUUCAC AA UUUGCAUAU      UAUAGUU A   ||||||||||||| |||  ||||| ||||| ||| ||||||||| || |||||||||      ||||||| U   AACCAGUAAAGAA UAG  UGUUU ACUAU AUU UAACAAGUG UU AAAUGUAUA      AUAUCAA A AA             U   GU     C     -   A         C  A         UAAAAU       A
Stem-loop sequence	UUGGUCAUUUCUUUAUCUGACAAAAUGAUAGUAACAUUGUUCACAAAAUUUGCAUAUCCCUCUUAUAGUUUAUAAAACUAUAUAAAAUAUAUGUAAAAUUCGUGAACAAUAUUAUAUCACUUUGUUGGAUUAAGAAAUGACCAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015764209.1	ncRNA:24   AAACAGUCUAUUUCUUUACUGGUU   1   |||||==|||=||||||||||||| targets:22   UUUGUUGGAUGAAGAAAUGACCAA   45 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X7, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764210.1	ncRNA:24   AAACAGUCUAUUUCUUUACUGGUU   1   |||||==|||=||||||||||||| targets:22   UUUGUUGGAUGAAGAAAUGACCAA   45 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X12, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764208.1	ncRNA:24   AAACAGUCUAUUUCUUUACUGGUU   1   |||||==|||=||||||||||||| targets:22   UUUGUUGGAUGAAGAAAUGACCAA   45 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X2, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764207.1	ncRNA:24   AAACAGUCUAUUUCUUUACUGGUU   1   |||||==|||=||||||||||||| targets:22   UUUGUUGGAUGAAGAAAUGACCAA   45 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X1, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
AK068923.1	ncRNA:24   AAA-------CAGUCUAUUUCUUUACUGGUU   1   |||-------|||||||==|||||||||||| targets:1596   UUUAAAUAGAGUCAGAUGGAGAAAUGACCAA   1626 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget
CT831299.1	ncRNA:24   AAACAGUCUAUUUCUUUACUGGUU   1   ***|||||||==|||||||||||| targets:1063   AGAGUCAGAUGGAGAAAUGACCAA   1086 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA205E03, full insert sequence	NA	coding protein	psRNATarget