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BaseInfo

ncRNA ID	novel_osa_miR1054
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:8681194-8681331 [-]
Reference genome	IRGSP-1.0
Source	SRR1742992
Length	24
Mature sequence(if miRNA)	115 - AAGAUUGAUCUUCGCAGGCGGACC - 138
Stem-loop(if miRNA)	--            C        A                          U             -  C A   AAGAUUGAUCUU GCAGGCGG CCAUAUAAGCGUCGCCUGCGAAGAUC AUUUUCGCAGGCG CA G C   |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| || |   UUCUAACUAGAA CGUCCGCC GGUAUAUUCGCAGCGGACGCUUCUAG UAGAAGCGUUCGC GU C A GC            A        A                          C             C  - U
Stem-loop sequence	AAGAUUGAUCUUCGCAGGCGGACCAUAUAAGCGUCGCCUGCGAAGAUCUAUUUUCGCAGGCGCACGACAUCUGCCGCUUGCGAAGAUCGAUCUUCGCAGGCGACGCUUAUAUGGACCGCCUGCAAAGAUCAAUCUUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB164746.1	ncRNA:24   CCAGGCGGACGCUUCUAGUUAGAA   1   *|||-|=||||||||||||||||| targets:30   CGUC-GUCUGCGAAGAUCAAUCUU   52 Target Full Sequence	1.0	Sequence 2410 from Patent EP2559767	NA	coding protein	psRNATarget
JB164746.1	ncRNA:24   CCAG---GCGGACGCUUCUAGUUAGAA   1   *|||---|||=||||||||||=||||| targets:108   CGUCUACCGCUUGCGAAGAUCGAUCUU   134 Target Full Sequence	2.5	Sequence 2410 from Patent EP2559767	NA	coding protein	psRNATarget
JB164746.1	ncRNA:24   CCAGGCGGACGCUUCUAGUUAGAA   1   |**=||||||||||||||*||||| targets:71   GCCUCGCCUGCGAAGAUCUAUCUU   94 Target Full Sequence	1.5	Sequence 2410 from Patent EP2559767	NA	coding protein	psRNATarget
HI404285.1	ncRNA:24   CCAGGCGGACGCUUCUAGUUAGAA   1   *|||-|=||||||||||||||||| targets:30   CGUC-GUCUGCGAAGAUCAAUCUU   52 Target Full Sequence	1.0	Sequence 2410 from Patent EP2074227	NA	coding protein	psRNATarget
HI404285.1	ncRNA:24   CCAG---GCGGACGCUUCUAGUUAGAA   1   *|||---|||=||||||||||=||||| targets:108   CGUCUACCGCUUGCGAAGAUCGAUCUU   134 Target Full Sequence	2.5	Sequence 2410 from Patent EP2074227	NA	coding protein	psRNATarget
HI404285.1	ncRNA:24   CCAGGCGGACGCUUCUAGUUAGAA   1   |**=||||||||||||||*||||| targets:71   GCCUCGCCUGCGAAGAUCUAUCUU   94 Target Full Sequence	1.5	Sequence 2410 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236415.1	ncRNA:24   CCAGGCGGACGCUUCUAGUUAGAA   1   *|||-|=||||||||||||||||| targets:30   CGUC-GUCUGCGAAGAUCAAUCUU   52 Target Full Sequence	1.0	Sequence 2410 from Patent EP2985353	NA	coding protein	psRNATarget
LQ236415.1	ncRNA:24   CCAG---GCGGACGCUUCUAGUUAGAA   1   *|||---|||=||||||||||=||||| targets:108   CGUCUACCGCUUGCGAAGAUCGAUCUU   134 Target Full Sequence	2.5	Sequence 2410 from Patent EP2985353	NA	coding protein	psRNATarget
LQ236415.1	ncRNA:24   CCAGGCGGACGCUUCUAGUUAGAA   1   |**=||||||||||||||*||||| targets:71   GCCUCGCCUGCGAAGAUCUAUCUU   94 Target Full Sequence	1.5	Sequence 2410 from Patent EP2985353	NA	coding protein	psRNATarget