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BaseInfo

ncRNA ID novel_osa_miR1052
Species Oryza sativa
Class miRNA
Genome position Chr4:23857997-23858109 [-]
Reference genome IRGSP-1.0
Source SRR1742992
Length 24
Mature sequence(if miRNA) 1 - AAUUUAGUCCCUGAAUCCAAACAC - 24
Stem-loop(if miRNA) --        C  A             AUCCC      -AUUGG        AC   AA
  GUUUGGAU CA GGACUAAAUUUUA     UGUCAU      AUGUUUGG  ACU  U
  |||||||| || |||||||||||||     ||||||      ||||||||  |||  U
  CAAACCUA GU CCUGAUUUAAAAU     ACAGUA      UGCAAAUU  UGA  A
CA        A  C             ----C      AUCAGA        -A   AG
Stem-loop sequence GUUUGGAUCCAAGGACUAAAUUUUAAUCCCUGUCAUAUUGGAUGUUUGGACACUAAUUAGAAGUAUUAAACGUAGACUAAUGACACUAAAAUUUAGUCCCUGAAUCCAAACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288793.1
ncRNA:24   CACAAACCUAAGUCCCUGAUUUAA   1
  *|||||*|||||||||||||||||
targets:3015   UUGUUUAGAUUCAGGGACUAAAUU   3038

1.0 Oryza sativa Japonica Group cDNA, clone: J090070C08, full insert sequence NA coding protein psRNATarget