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BaseInfo

ncRNA ID	novel_osa_miR1051
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:3948379-3948430 [+]
Reference genome	IRGSP-1.0
Source	SRR1742992
Length	24
Mature sequence(if miRNA)	1 - UAGAGUGGAGUUGUGGAGCUGCCU - 24
Stem-loop(if miRNA)	-UA   -                CCU    GAG UGGAGUUGUGGAGCUG   A    ||| ||||||||||||||||    CUU AUCUCAACACCUCGAC   A UUA   G                CCA
Stem-loop sequence	UAGAGUGGAGUUGUGGAGCUGCCUAAACCCAGCUCCACAACUCUAGUUCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015766456.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   ||||||||||||||=||||||||| targets:2002   AGGCAGCUCCACAAUUCCACUCUA   2025 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326508 (LOC4326508), transcript variant X2, mRNA	uncharacterized LOC4326508(LOC4326508)	coding protein	psRNATarget
CT829735.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   ||||||||||||||||||||||*| targets:382   AGGCAGCUCCACAACUCCACUCCA   405 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104I06, full insert sequence	NA	coding protein	psRNATarget
XM_015766500.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   ||||||||||||||||||||||*| targets:1225   AGGCAGCUCCACAACUCCACUCCA   1248 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable staphylococcal-like nuclease CAN1 (LOC107276328), transcript variant X2, mRNA	probable staphylococcal-like nuclease CAN1(LOC107276328)	coding protein	psRNATarget
XM_015766499.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   ||||||||||||||||||||||*| targets:1234   AGGCAGCUCCACAACUCCACUCCA   1257 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable staphylococcal-like nuclease CAN1 (LOC107276328), transcript variant X1, mRNA	probable staphylococcal-like nuclease CAN1(LOC107276328)	coding protein	psRNATarget
AK288379.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   ||||||||||||||||||||||*| targets:72   AGGCAGCUCCACAACUCCACUCCA   95 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026K24, full insert sequence	NA	coding protein	psRNATarget
AK288470.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   ||||||||||||||||||||||*| targets:3418   AGGCAGCUCCACAACUCCACUCCA   3441 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090037J05, full insert sequence	NA	coding protein	psRNATarget
AK288048.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   ||||||||||||||||||||||*| targets:3574   AGGCAGCUCCACAACUCCACUCCA   3597 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075146M20, full insert sequence	NA	coding protein	psRNATarget
AK059695.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   ||||||||||||||||||||||*= targets:327   AGGCAGCUCCACAACUCCACUCCG   350 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-032-B12, full insert sequence	NA	coding protein	psRNATarget
XM_015768499.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   |*||||||||||||||||||||*| targets:1207   ACGCAGCUCCACAACUCCACUCCA   1230 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 8 (LOC107276173), transcript variant X2, mRNA	calcineurin B-like protein 8(LOC107276173)	coding protein	psRNATarget
XM_015768498.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   |*||||||||||||||||||||*| targets:1240   ACGCAGCUCCACAACUCCACUCCA   1263 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 8 (LOC107276173), transcript variant X1, mRNA	calcineurin B-like protein 8(LOC107276173)	coding protein	psRNATarget
XM_015779315.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   |*||||||||||||||||||||*| targets:3827   AUGCAGCUCCACAACUCCACUCCA   3850 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein Rf1, mitochondrial (LOC9271155), mRNA	protein Rf1, mitochondrial(LOC9271155)	coding protein	psRNATarget
XM_015764600.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   ||*|*|=||||||||||=|||||| targets:1275   AGACUGUUCCACAACUCUACUCUA   1298 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g18257 (LOC4326861), mRNA	uncharacterized protein At4g18257(LOC4326861)	coding protein	psRNATarget
XM_015791737.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   |*||*|||*||||||||*|||||| targets:1392   AUGCUGCUACACAACUCAACUCUA   1415 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344184 (LOC4344184), transcript variant X5, mRNA	uncharacterized LOC4344184(LOC4344184)	coding protein	psRNATarget
XM_015791736.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   |*||*|||*||||||||*|||||| targets:1413   AUGCUGCUACACAACUCAACUCUA   1436 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344184 (LOC4344184), transcript variant X4, mRNA	uncharacterized LOC4344184(LOC4344184)	coding protein	psRNATarget
XM_015791735.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   |*||*|||*||||||||*|||||| targets:1562   AUGCUGCUACACAACUCAACUCUA   1585 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344184 (LOC4344184), transcript variant X1, mRNA	uncharacterized LOC4344184(LOC4344184)	coding protein	psRNATarget
AK066432.1	ncRNA:24   UCCGUCGAGGUGUUGAGGUGAGAU   1   |*||*|||*||||||||*|||||| targets:1570   AUGCUGCUACACAACUCAACUCUA   1593 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013064M13, full insert sequence	NA	coding protein	psRNATarget